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Report for CCDS57030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57030.1 Public Mus musculus 16 Ccdc191 23 108 98 CCDS HistoryNCBI Gene:212153Re-query CCDS DB by CCDS ID:57030.1Re-query CCDS DB by GeneID:212153See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178400.8 ENSMUSP00000137597.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178400.8Link to Ensembl Protein Viewer:ENSMUSP00000137597.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178400Re-query CCDS DB by Protein ID:ENSMUSP00000137597
Original member Current member NCBI NM_027801.1 NP_082077.1 Accepted alive Link to Nucleotide Sequence:NM_027801.1Link to Protein Sequence:NP_082077.1Re-query CCDS DB by Nucleotide ID:NM_027801Re-query CCDS DB by Protein ID:NP_082077Link to BLAST:NP_082077.1

Chromosomal Locations for CCDS 57030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 43889991 43890038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43898090 43898231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43905346 43905483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43906788 43906966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43908412 43908635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43915450 43915603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43931194 43931384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43938914 43939163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43943504 43943964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43944639 43944730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43946669 43946751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43947427 43947528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43956818 43956961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43959216 43959368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43960018 43960163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 43963268 43963412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2652 nt):
ATGGAGCTGAGTCGCTGGAAACGGTTATCAAGGAAGCTGAATCTCAAGAGAGTGGAGAAAGCTTCAGAAT
TTGCCATTTCGAATACCTGTTCTACCAGAAATGCAGATTTGCCTGGAAGGTTTTGGCGGCAAGCAGTAGA
TCTGGCAACATGTGAGGAAACAGAGTATCATGATGACGTCTATGAAGAAGCTCAGGAACTAGTCAATGAC
TGGCTGGACAACAAACTTAAACAAGAATTAGCAAGTGATGGAGAAGGGGAAAGCACTGTGCTGAGCAGCC
CCCCTGTGCCAGACGCCCATGACCATTTGAAGTATGACAAGTTTGATGATTTATGTGGCTATTTGGAGGA
AGAGGAGGAAAGTGCCACTGTTCAGAAATTTATAGAGCATCTGCTCCATAAAGAAGTGGTGGCTTCTGAG
ATGGTGGAAGAGCTTGGAATGGAGGAGAACCAAGACAAGAGGCAGCAGAAGGATCCTCGTCTTACCATGG
AGATGAGACATAAGCAGGTCAAGGAAAATCGCTTAAGACGCGAGAAACAACTGGAGTCCCAGAGAATGGC
AGATGCCCTGAAAAAAGCAGCCTTCTTGGAGGCTCAGAGTCTAGTGCAGGAAGAAAAGAGAAGGAAGGCT
CTGCTGGCCAAGAAAGAGAAGGAGGACATTCAGAGAGAGATGGTAAAGCTGCGGAGGGAGATACTTGAAA
GAAGGCACACTGTGGAAGAAGCATGGAAAACAGAAAAGAAAAGACAAGAAGAAATTTCTCAGAAGAATTC
AGAGGGAAAAATGATGGAAAGTACTCACATACATCTGGATGAAGAAAAAGTTGCAAAAGAAAGAAAAAGA
AAACTGAGGGAGACACTAATCCAGACTTTCAAGGAAAATCAGCAGTGTCAAAAACGGTATTTCTCTGCCT
GGCACAAGCTGATTCTGGATCATAGGATTAAGCTGGGGAAAGCGGGGACTCTGTCTGACTGGAAGCTTCA
ACTGAAGGTCCTGAGAGCCTGGAGAGACCATACACGATCCCGGAAGTTGGAACGAGAGACCAAAGCCTTG
GAAAATGACCTTAGGGAAGAAAACAGAAAACAACAGCTGGCTACTGAGTTTAACCGGAAACACGTTCTTC
GATACTGCTTTGGTGAATGGCAGCGTTGGCATGGTTCAGAAGTTATCAAGAGGGAGCTGGCTCTCGCAAA
GGAGCAAACTAGGAAGAAAATGGATGAGCTGCTGAAGGCAGCCTCCCTCGGGAAACTCAGTTCTAAGGGG
TCATCAGGTATCGGTCTCGTTGCTGAGGCAGTGGCTGTGATGGACCCAGCAGTAGGAAGTGGAGAGGTCA
CTATCCTGTCCCCTTTGTGGGAAAGGCCACCTGTGGAGAGCAGTGGTTGTACACTCAGCCATTCCCCAGA
AAGAACCACCAAGGGTAATTGTCAGGGTCCTCTCCCAGATGTCTCTGGGAGCACACCTGGCACGGAGCAG
TGCAAGGCTGTAGCAGCTGAGACCTCTGAGCAGCCTGGTAGCTGTGAACGACCTGGGACCACAAGGCAGG
AGGCAGAAGCTGCTTGTGTGAGGCATTTCCACCGTAGCCATGTGTACCAGCAACAGCTGATTGAGAAGCA
AAAGAAGAAACTTGAGCAGCAGCAGAAAACCATTCAGAAGCTAAAGGAAAACCAGCGCTTGGCCGAGGCC
CGGTGGGCAGCTAAGCGAGCCCCGGCAGTCACAGAAGGACAGAACTGCCTTCAGTCAGACCCCAGAGGAG
CAAGGGACCCGCAGGGCACCTGCCAGAGGCTTCTGAAGTGTGAAGATAGTAGAACTGATTGCAGAAAACC
CCTTTCTGCATCCAGAAGGACCCTGAAGCAGCCAACAGCACCCCATCCCTTACTGAAAGCCATGGAAGAG
AGAGCAATTCAACGAGCTGAACGTAGGCAGATCTTGGCAGAAAAGAAGAAAAAACAAGAAGAAGACAAAT
TGGCTCAGTTAAAAGCCCAAGAGGAAGAACGCCAAAAGAAGGATGCAGAAGAAAAGGAAGCCCAGCTGGA
GAGAAAACGAGAGGAAAGGAGGCTGAAGAAGATGAAAGAACTAGAGAAACAGAAGAGAATTAAAAGAATT
CAAGAGTTGGAAGCAGTAGCCAAAGGTCATTATGAGAGGGTCTTGCTAAGGAAAAAAGGCCTGGAGCCCT
GGAAGAGACTGAGAATGCAAAGCAAGCACAACATTGAGGTAGCAGAAAAGTATCACTCTTTGGCTTTACA
AAGAAAATGCCTGCTCAACTGGTTCCAGTATAGCCAGGAAACTCTGGCTATGAAGACAGCCAAGGCTGAT
CAATTTTACTCCCAACTGTTGTATAGGAGAAGCATCCGGAGCTGGCTCCAGTATGTCAGTGATCTAGAGA
AAGAAGTCAGGAGACTTTGCACCTACTTACTGCAGAAGAAGATTTTCAAGGCCTGGCTTACTACTGTCAG
GGAGCTGAAGATGGATTCGCAAAGAAAGCTTAAGGTTGCCACAGAACACTGTGACAGGAAGATTCTCATG
CTCACCCTGGAGATGTGGAAGGCATTTGTAAAACTTACCAAAGAAGAAAGAGTGAAGGAAGAACGCCGAG
ACCACCTCCGCCGGAAGGTCTCCGAAATCCTTCCAGACTTCCAGATGCTGGTGCCTCCGTGA

Translation (883 aa):
MELSRWKRLSRKLNLKRVEKASEFAISNTCSTRNADLPGRFWRQAVDLATCEETEYHDDVYEEAQELVND
WLDNKLKQELASDGEGESTVLSSPPVPDAHDHLKYDKFDDLCGYLEEEEESATVQKFIEHLLHKEVVASE
MVEELGMEENQDKRQQKDPRLTMEMRHKQVKENRLRREKQLESQRMADALKKAAFLEAQSLVQEEKRRKA
LLAKKEKEDIQREMVKLRREILERRHTVEEAWKTEKKRQEEISQKNSEGKMMESTHIHLDEEKVAKERKR
KLRETLIQTFKENQQCQKRYFSAWHKLILDHRIKLGKAGTLSDWKLQLKVLRAWRDHTRSRKLERETKAL
ENDLREENRKQQLATEFNRKHVLRYCFGEWQRWHGSEVIKRELALAKEQTRKKMDELLKAASLGKLSSKG
SSGIGLVAEAVAVMDPAVGSGEVTILSPLWERPPVESSGCTLSHSPERTTKGNCQGPLPDVSGSTPGTEQ
CKAVAAETSEQPGSCERPGTTRQEAEAACVRHFHRSHVYQQQLIEKQKKKLEQQQKTIQKLKENQRLAEA
RWAAKRAPAVTEGQNCLQSDPRGARDPQGTCQRLLKCEDSRTDCRKPLSASRRTLKQPTAPHPLLKAMEE
RAIQRAERRQILAEKKKKQEEDKLAQLKAQEEERQKKDAEEKEAQLERKREERRLKKMKELEKQKRIKRI
QELEAVAKGHYERVLLRKKGLEPWKRLRMQSKHNIEVAEKYHSLALQRKCLLNWFQYSQETLAMKTAKAD
QFYSQLLYRRSIRSWLQYVSDLEKEVRRLCTYLLQKKIFKAWLTTVRELKMDSQRKLKVATEHCDRKILM
LTLEMWKAFVKLTKEERVKEERRDHLRRKVSEILPDFQMLVPP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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