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Report for CCDS56870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56870.1 Public Mus musculus 13 Zmynd11 23 108 98 CCDS HistoryNCBI Gene:66505Re-query CCDS DB by CCDS ID:56870.1Re-query CCDS DB by GeneID:66505See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110634.7 ENSMUSP00000106264.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110634.7Link to Ensembl Protein Viewer:ENSMUSP00000106264.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110634Re-query CCDS DB by Protein ID:ENSMUSP00000106264
Original member Current member EBI ENSMUST00000110636.8 ENSMUSP00000106266.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110636.8Link to Ensembl Protein Viewer:ENSMUSP00000106266.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110636Re-query CCDS DB by Protein ID:ENSMUSP00000106266
Original member Current member NCBI NM_001199141.2 NP_001186070.1 Accepted alive Link to Nucleotide Sequence:NM_001199141.2Link to Protein Sequence:NP_001186070.1Re-query CCDS DB by Nucleotide ID:NM_001199141Re-query CCDS DB by Protein ID:NP_001186070Link to BLAST:NP_001186070.1
Original member Current member NCBI NM_001347474.1 NP_001334403.1 Accepted alive Link to Nucleotide Sequence:NM_001347474.1Link to Protein Sequence:NP_001334403.1Re-query CCDS DB by Nucleotide ID:NM_001347474Re-query CCDS DB by Protein ID:NP_001334403Link to BLAST:NP_001334403.1
Original member Current member NCBI NM_001347476.1 NP_001334405.1 Accepted alive Link to Nucleotide Sequence:NM_001347476.1Link to Protein Sequence:NP_001334405.1Re-query CCDS DB by Nucleotide ID:NM_001347476Re-query CCDS DB by Protein ID:NP_001334405Link to BLAST:NP_001334405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186070.1 602 Q8R5C8 602 100% 0 0
NP_001334403.1 602 Q8R5C8 602 100% 0 0
NP_001334405.1 602 Q8R5C8 602 100% 0 0

Chromosomal Locations for CCDS 56870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 9686862 9686984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9689063 9689248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9689452 9689724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9690446 9690514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9690903 9691110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9693430 9693548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9694269 9694346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9695129 9695184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9695739 9695826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9697644 9697736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9698628 9698705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9710146 9710307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9720773 9720932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9735332 9735447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAGCCATTGAAA
TTATCAGAAATCAGAAGCAGATTGCCAACATTGATCGTATTACAAAGTATATGTCCCGAGTCCACGGTAT
GCATCCCAAAGAGACCACCCGCCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAACA
GTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAGGAAGGATATTGGTTACCAGGAGATGAGATTGACT
GGGAAACAGAAACTCATGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCT
GTGTTTTCGTGTGTATCATTCCAAGTGTTTGTCTGATGAGTTCAGGCTTAGAGACAGCAGTAGTCACTGG
CAGTGCCCAGTTTGCAGGAGCATTAAGAAGAAGCACTCTAACAAGCAGGAAATGGGCACCTACTTGAGGT
TCATCGTCTCCCGAATGAAGGAGCGGGCTATAGACCTTAATAAGAAAGGAAAGGACAGTAAGCATCCTAT
GTACCGGAGGCTGGTCCACTCAGCTGTTGACGTCCCTACCATACAAGAGAAGGTGAATGAGGGGAAGTAC
CGGAGTTACGAGGAGTTCAAGGCTGACGCACAGCTGCTTCTCCACAACACAGTGATCTTCTATGGAGCAG
ACAGTGAGCAGGCGGACATTGCACGGATGTTATATAAAGACACGTGTCACGAGCTGGACGAGCTGCAGCT
TTGCAAGAACTGCTTCTATCTGTCAAACGCACGGCCCGACAACTGGTTCTGCTACCCTTGCATACCTAAT
CATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTTTTGGCCAGCCAAAGTCATGCAGAAAGAAGACA
ATCAAGTGGATGTTCGCTTCTTTGGCCATCACCACCAGAGAGCCTGGATTCCTTCTGAAAACATCCAGGA
TATCACGGTCAATGTTCACCGACTGCACGTGAAGCGCAGCATGGGCTGGAAGAAGGCCTGTGACGAGCTG
GAACTGCATCAGCGCTTCCTCCGTGAAGGAAGGTTCTGGAAGTCTAAGAATGAGGACCGAGGTGAGGAAG
AGGCAGAATCCAGTATCTCCTCCACCAGTAACGAGCAGCTGAAGGTCACTCAAGAGCCAAGAGCAAAGAA
AGGACGACGTAATCAGAGTGTGGAGCCCAAAAAGGAAGAACCCGAGCCAGAAACGGAAGCAGTGAGTTCC
AGCCAGGAAATCCCCACAATGCCTCAGCCAATTGAGAGGGTGTCAGTGTCAACCCAGACCAAGAAGTTAA
GTGCCTCTTCCCCACGAATGCTGCATCGAAGCACTCAGACGACGAGCGACGGCGTCTGTCAGAGCATGTG
CCACGACAAGTACACCAAAATTTTTAATGACTTTAAAGACAGGATGAAGTCGGACCACAAGCGGGAAACA
GAGAGAGTGGTCCGTGAAGCGCTGGAAAAGTTGCGTTCTGAAATGGAAGAAGAAAAAAGACAGGCCGTGA
ACAAAGCTGTGGCCAGCCTGCAGGGCGACATGGACAGAAAGGGTAAGCAGCTGAAGGAGAAGTGCAAGGA
AGAGTTTGTAGAGGAGATCAAGAAGCTAGCGGCGCAGCACAAGCAGCTCATTTCCCAGACCAAGAAGAAG
CAGTGGTGCTACAACTGTGAGGAGGAGGCCATGTACCACTGCTGCTGGAACACGTCCTACTGCTCCATCA
AGTGCCAGCAGGAGCACTGGCACGCAGAGCACAAGCGCACCTGCCGCCGGAAGAGATGA

Translation (602 aa):
MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRVHGMHPKETTRQLSLAVKDGLIVETLT
VGCKGSKAGIEQEGYWLPGDEIDWETETHDWYCFECHLPGEVLICDLCFRVYHSKCLSDEFRLRDSSSHW
QCPVCRSIKKKHSNKQEMGTYLRFIVSRMKERAIDLNKKGKDSKHPMYRRLVHSAVDVPTIQEKVNEGKY
RSYEEFKADAQLLLHNTVIFYGADSEQADIARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPN
HELVWAKMKGFGFWPAKVMQKEDNQVDVRFFGHHHQRAWIPSENIQDITVNVHRLHVKRSMGWKKACDEL
ELHQRFLREGRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKEEPEPETEAVSS
SQEIPTMPQPIERVSVSTQTKKLSASSPRMLHRSTQTTSDGVCQSMCHDKYTKIFNDFKDRMKSDHKRET
ERVVREALEKLRSEMEEEKRQAVNKAVASLQGDMDRKGKQLKEKCKEEFVEEIKKLAAQHKQLISQTKKK
QWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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