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Report for CCDS56739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56739.1 Public Mus musculus 10 Mybpc1 23 108 98 CCDS HistoryNCBI Gene:109272Re-query CCDS DB by CCDS ID:56739.1Re-query CCDS DB by GeneID:109272See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56739.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119185.7 ENSMUSP00000112699.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119185.7Link to Ensembl Protein Viewer:ENSMUSP00000112699.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119185Re-query CCDS DB by Protein ID:ENSMUSP00000112699
Original member Current member NCBI NM_001252372.1 NP_001239301.1 Accepted alive Link to Nucleotide Sequence:NM_001252372.1Link to Protein Sequence:NP_001239301.1Re-query CCDS DB by Nucleotide ID:NM_001252372Re-query CCDS DB by Protein ID:NP_001239301Link to BLAST:NP_001239301.1

Chromosomal Locations for CCDS 56739.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88519938 88519943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88521277 88521335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88522967 88523153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88524969 88525105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88526282 88526441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88529425 88529564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88531669 88531864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88533485 88533573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88536315 88536482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88540949 88541083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88542328 88542516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88543718 88543822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88545972 88546131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88548768 88548901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88549257 88549363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88551394 88551556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88553256 88553422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88554664 88554769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88555616 88555740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88558571 88558703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88560224 88560390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88566508 88566564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88568598 88568649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88570539 88570656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88571520 88571668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88573416 88573529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88585660 88585695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88604901 88604925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3384 nt):
ATGCCAGAACCCACTAAGAAAGAGGAAAATGAAGTGTCCGCCCCAGCCCCTCCCCCGGAAGAATGGTCTC
TTGGTGAGTCACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTT
TGTTGAAAAACCTCAAACCGGATCGGTGAAAGTTGGTGCAAACATCACCTTTGTAGCCAAAGTTAGGGCT
GAAGATCTTCTTAGAAAACCCACTGTCAAATGGTTCAAGGGGAAATGGATGGATCTGGCCAGCAAAGCCG
GGAAACACCTGCAGCTGAAGGAGACCTTCGAGAGGCAAACTCGGGTATACACATTCGAGATGCAGATCAT
CAAAGCCAAAGAGAACTACGCAGGGAATTATAGGTGTGAGGTCACCTACAAGGATAAATTTGACAGCTGT
TCGTTTGATCTTGAAGTCCATGAGTCTACTGGGACTACTCCAAACATTGACATCAGATCTGCCTTCAAAA
GAAGTGGAGAAGGTCAAGAGGATGCAGGGGAACTTGACTTTAGTGGTCTCCTGAAACGTAGGGAGGTGAA
GCAGCAGGAAGAGGAGCCTGAGATAGACGTGTGGGAGCTGCTGAAAAATGCCAACCCCAACGAATACGAG
AAGATCGCTTTCCAGTATGGCATCACCGACTTGCGTGGCATGCTTAAGCGGCTCAAGCGCATGCGCAGGG
TGGAAAAGAAGAGCGCAGCTTTTGCAAAAATTCTCGATCCTGCATATCAGGTGGATAAAGGAGGCAAAGT
GAGATTTGTCGTGGAGTTGGCAGACCCAAAACTGGAGGTGAAATGGTTTAAAAATGGCCAAGAGATTCGA
CCCAGCACAAAATACATCTTTGAGCACAAAGGAAACGAGAGAATCATGTTTATTAATAACTGTTCGCTGA
CAGATGATTCGGAGTACTATGTGACAGCTGGAGATGAGAAATGTTCTACTGAGCTCTTTGTAAGAGAGCC
TCCAATCATGGTGACTAAGCAGCTGGAAGACATGAACGCTTACTGTGGGGAGAGGGTAGAGATGGAAGTT
GAGGTGTCTGAAGATGACGCCAATGTAAAATGGTTTAAGAATGGTGAAGAGATCTTCCCTGGTCCAAAGT
CAAGATACAAGATTAAAGTTGAAGGCAAAAAGCACACGTTGATCATAGAAGGGGCAACAAAGGCTGACAG
TGCGGAGTACTCAGCCATGACAACCGGGGGACAATCATCTGCCAAACTCAGCGTTGACTTGAGACCTCTA
AAGATCACGACGCCTCTGACGGACCAGACAGTAAAACTTGGGAAAGAAGTATGCTTGAAGTGTGAAATCT
CTGAAAATGTACCAGGAAAATGGACAAAAAATGGCCTCCCTGTTCAGGAGGGTGAGCGTCTGAAGGTTGT
TCACAAGGGAAGAATCCACAAGTTAGTCATAGCCAATGCTCTCATTGAAGATGAAGGTGAATATGTATTT
ACACCAGATGCCTACAATGTTCCTTTGTCTGCCAAAGTTCATGTCATCGACCCTCCCAAGATCATCCTGG
ATGGCCTGGATGCTGATAACACAGTGACAGTGATAGCTGGAAGCAAGCTTCGCCTGGAGATTCCTGTCAC
AGGGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAGATAAGGCTATTATGGAAGGCAGTGGTCGGATC
AGGGCAGAATCCTACCCTGACAGCAGCACACTGGTCATTGACGTGGCAGAGAGAGACGACTCTGGTGTGT
ACAACATAAATCTGAAAAATGAGGCTGGAGAAGCACATGCAAGCATCAAGATTAAGGTTGTGGATATCCC
TGATCCTCCAGTGGCACCAAATGTGACAGAAGTGGGAGATGACTGGTGCATCATGAACTGGGAGCCTCCT
GCCTATGATGGAGGGTCTCCAATCTTAGGATACTTTATTGAGAGGAAAAAGAAACAAAGCTCCAGGTGGA
TGAGACTGAATTTCGATCTCTGCAAAGAGACAACTTTTGAGCCCAAGAAGATGATTGAAGGCGTGGCCTA
CGAGGTCCGAATCTTTGCGGTCAACGCCATTGGCATCTCCAAGCCCAGTATGCCCTCCAAGCCCTTTGTT
CCTTTGGCTGTGACCAGCCCTCCTACTCTTCTGGCTGTCGACTCCGTGACTGACTCGTCTGTGACGATGA
AGTGGAGGCCCCCAGATCAGATTGGCGCAGCAGGTTTAGATGGCTATGTGCTAGAGTATTGCTTTGAAGG
AACTGAGGACTGGATAGTTGCAAACACAGACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCC
ACGGATGCGAAGATCTTTGTACGTGTGAAGGCTATTAACGCGGCTGGGGCTAGTGAGCCCAAGTACTATT
CTCAGCCCATCCTTGTGAAGGAAATCATTGAGCCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAAC
TTACATCCGCAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTTTTCAGGGTAAACCAAGACCAGAGTTG
ACCTGGAAGAAGGACGGTGAAGAAATTGACAAGAATCAAATAAACATTCGCAACTCAGAAACTGATACCA
TCATATTCATCCGGAAAGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATA
CGTGGAAAATGCCTCTATCGACATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACTATTGAA
GATGTGTGGGGAGAGAATGTTGCCCTAACATGGACACCACCAAAGGACGATGGGAATGCTGCCATCACAG
GGTACACCATCCAGAAGGCCGACAAGAAAAGCATGGAATGGTTCACCGTCATTGAACATTACCACCGAAC
CAACGCCACCATTACTGAGCTGGTCATAGGGAACGAGTATTACTTCCGGGTCTTTGCTGAAAACATGTGC
GGCCTTAGCGAGGATGCAACTATGACGAAGGAGAGTGCAGTGATTGCCAAGGACGGTAAGATCTATAAAA
ATCCAGTGTACGAAGACTTCAATTTCACAGAGGCCCCCATGTTTACTCAACCTTTGGTTAACACCTATGC
CATCGCTGGTTACAATGCCACCCTGAACTGCAGCGTCCGAGGAAATCCCAAGCCCAAAATCACCTGGATG
AAAAACAAAGTGGCTATTGTGGATGACCCAAGATACAGAATGTTCAGCAACCAAGGAGTCTGTACCCTGG
AGATCCGCAAGCCTAGTCCTTATGACGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGT
GGAGATTGAATGCAAACTGGAGGTGAAAGTGATATATCAAGGAGTAAATACCCCTGGACAGCCAGTCTCC
CTGGAGGGGCAGCAACAGTCGTAG

Translation (1127 aa):
MPEPTKKEENEVSAPAPPPEEWSLGESPAGGEEQDKQNANSQLSTLFVEKPQTGSVKVGANITFVAKVRA
EDLLRKPTVKWFKGKWMDLASKAGKHLQLKETFERQTRVYTFEMQIIKAKENYAGNYRCEVTYKDKFDSC
SFDLEVHESTGTTPNIDIRSAFKRSGEGQEDAGELDFSGLLKRREVKQQEEEPEIDVWELLKNANPNEYE
KIAFQYGITDLRGMLKRLKRMRRVEKKSAAFAKILDPAYQVDKGGKVRFVVELADPKLEVKWFKNGQEIR
PSTKYIFEHKGNERIMFINNCSLTDDSEYYVTAGDEKCSTELFVREPPIMVTKQLEDMNAYCGERVEMEV
EVSEDDANVKWFKNGEEIFPGPKSRYKIKVEGKKHTLIIEGATKADSAEYSAMTTGGQSSAKLSVDLRPL
KITTPLTDQTVKLGKEVCLKCEISENVPGKWTKNGLPVQEGERLKVVHKGRIHKLVIANALIEDEGEYVF
TPDAYNVPLSAKVHVIDPPKIILDGLDADNTVTVIAGSKLRLEIPVTGEPPPKAIWSRADKAIMEGSGRI
RAESYPDSSTLVIDVAERDDSGVYNINLKNEAGEAHASIKIKVVDIPDPPVAPNVTEVGDDWCIMNWEPP
AYDGGSPILGYFIERKKKQSSRWMRLNFDLCKETTFEPKKMIEGVAYEVRIFAVNAIGISKPSMPSKPFV
PLAVTSPPTLLAVDSVTDSSVTMKWRPPDQIGAAGLDGYVLEYCFEGTEDWIVANTDLIDKTKFTINGLP
TDAKIFVRVKAINAAGASEPKYYSQPILVKEIIEPPKIRIPRHLKQTYIRRVGEAVNLVIPFQGKPRPEL
TWKKDGEEIDKNQINIRNSETDTIIFIRKAERSHSGKYDLQVKVDKYVENASIDIQIVDRPGPPQTVTIE
DVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTNATITELVIGNEYYFRVFAENMC
GLSEDATMTKESAVIAKDGKIYKNPVYEDFNFTEAPMFTQPLVNTYAIAGYNATLNCSVRGNPKPKITWM
KNKVAIVDDPRYRMFSNQGVCTLEIRKPSPYDGGTYCCKAVNDLGTVEIECKLEVKVIYQGVNTPGQPVS
LEGQQQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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