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Report for CCDS56663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56663.1 Public Mus musculus 1 Aida 23 108 98 CCDS HistoryNCBI Gene:108909Re-query CCDS DB by CCDS ID:56663.1Re-query CCDS DB by GeneID:108909See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109166.7 ENSMUSP00000104795.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109166.7Link to Ensembl Protein Viewer:ENSMUSP00000104795.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109166Re-query CCDS DB by Protein ID:ENSMUSP00000104795
Original member Current member NCBI NM_181732.4 NP_859421.1 Accepted alive Link to Nucleotide Sequence:NM_181732.4Link to Protein Sequence:NP_859421.1Re-query CCDS DB by Nucleotide ID:NM_181732Re-query CCDS DB by Protein ID:NP_859421Link to BLAST:NP_859421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859421.1 305 Q8C4Q6-1 305 100% 0 0

Chromosomal Locations for CCDS 56663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 183297519 183297628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183304678 183304747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183306424 183306477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183306885 183306939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183313661 183313724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183313979 183314082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183316580 183316702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183318812 183318934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183322284 183322401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183322489 183322585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGTCGGAGGTGACCCGGAGTCTGCTGCAGCGCTGGGGCGCCAGTCTTAGGAGAGGCGCCGACTTCGACT
CTTGGGGCCAGCTGGTGGAGGCGATAGACGAGTATCAGATATTAGCAAGACACTTACAGAAGGAGGCCCA
AGCTCAACACAATAATTCTGAATTTACAGAAGAACAAAAGAAAACCATAGGCAAAATTGCGACATGTTTG
GAATTGCGAAGTGCAGCATTACAGTCCACACAGTCCCAAGAAGAGTTTAAACTGGAGGACCTGAAGAAGC
TAGAACCAATCCTGAAGAATATTCTTACATATAATAAAGAATTCCCATTTGATGTTCAGCCTATTCCATT
AAGACGTATTTTAGCACCTGGTGAAGAAGAGAATTTGGAATTTGAAGAAGATGAAGAAGGTGGTGCTGGA
GCAGGGCCTCCTGATTCTTTCTCTGCTAGAGTTCCTGGTACTTTATTGCCACGGTTGCCATCGGAACCAG
GGATGACGTTACTCACCATCAGGATTGAGAAAATTGGTTTGAAAGATGCGGGGCAGTGCATCGATCCCTA
CATCACAGTCAGCGTGAAAGATTTGAATGGCATAGATTTAACTCCCGTACAAGACACTCCTGTGGCTTCA
AGGAAAGAAGATACTTACGTTCACTTTAATGTGGACATTGAGCTCCAGAAACACGTTGAAAGGTTAACCA
AAGGTGCGGCCATTTTCTTTGAATTCAAACATTACAAGCCTAAAAAGAGGTTTACCAGCACTAAGTGTTT
TGCCTTCATGGAGATGGATGAAATTAAACCTGGGCCAATCGTAATAGAACTATACAAGAAACCCACTGAC
TTTAAAAGAAAGAAATTGCAATTGTTGACCAAGAAACCACTTTATCTTCATCTACATCAAAGTTTGCACA
AGGAATGA

Translation (305 aa):
MSEVTRSLLQRWGASLRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCL
ELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPIPLRRILAPGEEENLEFEEDEEGGAG
AGPPDSFSARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVAS
RKEDTYVHFNVDIELQKHVERLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTD
FKRKKLQLLTKKPLYLHLHQSLHKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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