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Report for CCDS56626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56626.1 Public Mus musculus 1 Il1rl1 23 108 98 CCDS HistoryNCBI Gene:17082Re-query CCDS DB by CCDS ID:56626.1Re-query CCDS DB by GeneID:17082See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173514.7 ENSMUSP00000133784.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173514.7Link to Ensembl Protein Viewer:ENSMUSP00000133784.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173514Re-query CCDS DB by Protein ID:ENSMUSP00000133784
Original member Current member EBI ENSMUST00000174335.7 ENSMUSP00000134351.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174335.7Link to Ensembl Protein Viewer:ENSMUSP00000134351.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174335Re-query CCDS DB by Protein ID:ENSMUSP00000134351
Original member NCBI NM_001294171.1 NP_001281100.1 Updated not alive Link to Nucleotide Sequence:NM_001294171.1Link to Protein Sequence:NP_001281100.1Re-query CCDS DB by Nucleotide ID:NM_001294171Re-query CCDS DB by Protein ID:NP_001281100
Current member NCBI NM_001294171.2 NP_001281100.1 Accepted alive Link to Nucleotide Sequence:NM_001294171.2Link to Protein Sequence:NP_001281100.1Re-query CCDS DB by Nucleotide ID:NM_001294171Re-query CCDS DB by Protein ID:NP_001281100Link to BLAST:NP_001281100.1
Original member NCBI NM_010743.3 NP_034873.2 Updated not alive Link to Nucleotide Sequence:NM_010743.3Link to Protein Sequence:NP_034873.2Re-query CCDS DB by Nucleotide ID:NM_010743Re-query CCDS DB by Protein ID:NP_034873
Current member NCBI NM_010743.4 NP_034873.2 Accepted alive Link to Nucleotide Sequence:NM_010743.4Link to Protein Sequence:NP_034873.2Re-query CCDS DB by Nucleotide ID:NM_010743Re-query CCDS DB by Protein ID:NP_034873Link to BLAST:NP_034873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281100.1 337 P14719-2 337 100% 0 0
NP_034873.2 337 P14719-2 337 100% 0 0

Chromosomal Locations for CCDS 56626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40440750 40440828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40441292 40441502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40442306 40442480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40442599 40442761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40444334 40444402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40446087 40446228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40446530 40446704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGATTGACAGACAGAGAATGGGACTTTGGGCTTTGGCAATTCTGACACTTCCCATGTATTTGACAGTTA
CGGAGGGCAGTAAATCGTCCTGGGGTCTGGAAAATGAGGCTTTAATTGTGAGATGCCCCCAAAGAGGACG
CTCGACTTATCCTGTGGAATGGTATTACTCAGATACAAATGAAAGTATTCCTACTCAAAAAAGAAATCGG
ATCTTTGTCTCAAGAGATCGTCTGAAGTTTCTACCAGCCAGAGTGGAAGACTCTGGGATTTATGCTTGTG
TTATCAGAAGCCCCAACTTGAATAAGACTGGATACTTGAATGTCACCATACATAAAAAGCCGCCAAGCTG
CAATATCCCTGATTATTTGATGTACTCGACAGTACGTGGATCAGATAAAAATTTCAAGATAACGTGTCCA
ACAATTGACCTGTATAATTGGACAGCACCTGTTCAGTGGTTTAAGAACTGCAAAGCTCTCCAAGAGCCAA
GGTTCAGGGCACACAGGTCCTACTTGTTCATTGACAACGTGACTCATGATGATGAAGGTGACTACACTTG
TCAATTCACACACGCGGAGAATGGAACCAACTACATCGTGACGGCCACCAGATCATTCACAGTTGAAGAA
AAAGGCTTTTCTATGTTTCCAGTAATTACAAATCCTCCATACAACCACACAATGGAAGTGGAAATAGGAA
AACCAGCAAGTATTGCCTGTTCAGCTTGCTTTGGCAAAGGCTCTCACTTCTTGGCTGATGTCCTGTGGCA
GATTAACAAAACAGTAGTTGGAAATTTTGGTGAAGCAAGAATTCAAGAAGAGGAAGGTCGAAATGAAAGT
TCCAGCAATGACATGGATTGTTTAACCTCAGTGTTAAGGATAACTGGTGTGACAGAAAAGGACCTGTCCC
TGGAATATGACTGTCTGGCCCTGAACCTTCATGGCATGATAAGGCACACCATAAGGCTGAGAAGGAAACA
ACCAAGTAAGGAGTGTCCCTCACACATTGCTTGA

Translation (337 aa):
MIDRQRMGLWALAILTLPMYLTVTEGSKSSWGLENEALIVRCPQRGRSTYPVEWYYSDTNESIPTQKRNR
IFVSRDRLKFLPARVEDSGIYACVIRSPNLNKTGYLNVTIHKKPPSCNIPDYLMYSTVRGSDKNFKITCP
TIDLYNWTAPVQWFKNCKALQEPRFRAHRSYLFIDNVTHDDEGDYTCQFTHAENGTNYIVTATRSFTVEE
KGFSMFPVITNPPYNHTMEVEIGKPASIACSACFGKGSHFLADVLWQINKTVVGNFGEARIQEEEGRNES
SSNDMDCLTSVLRITGVTEKDLSLEYDCLALNLHGMIRHTIRLRRKQPSKECPSHIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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