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Report for CCDS56389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56389.1 Public Homo sapiens 5 CLINT1 24 110 108 CCDS HistoryNCBI Gene:9685Re-query CCDS DB by CCDS ID:56389.1Re-query CCDS DB by GeneID:9685See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56389.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523908.5 ENSP00000429824.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523908.5Link to Ensembl Protein Viewer:ENSP00000429824.1Re-query CCDS DB by Nucleotide ID:ENST00000523908Re-query CCDS DB by Protein ID:ENSP00000429824
Original member Current member NCBI NM_001195555.2 NP_001182484.1 Accepted alive Link to Nucleotide Sequence:NM_001195555.2Link to Protein Sequence:NP_001182484.1Re-query CCDS DB by Nucleotide ID:NM_001195555Re-query CCDS DB by Protein ID:NP_001182484Link to BLAST:NP_001182484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182484.1 643 Q14677-3 643 100% 0 0

Chromosomal Locations for CCDS 56389.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 157787646 157787992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157789363 157789567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157791703 157791995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157794898 157794972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157803650 157803719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157805866 157806112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157809628 157809805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157813063 157813227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157814185 157814293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157816734 157816830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157817443 157817547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157858930 157858970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGTTGAACATGTGGAAGGTGCGCGAGCTGGTGGACAAAGCCACCAATGTTGTTATGAATTATTCAGAGA
TCGAGTCTAAGGTTCGAGAGGCAACGAACGATGATCCTTGGGGACCTTCTGGGCAACTCATGGGAGAGAT
TGCCAAGGCTACATTTATGTATGAACAATTTCCAGAACTTATGAACATGCTTTGGTCACGAATGTTAAAA
GACAACAAAAAGAATTGGAGAAGAGTTTATAAGTCGTTGCTGCTCCTAGCTTACCTCATAAGGAATGGAT
CAGAGCGTGTTGTTACAAGTGCCAGAGAACACATTTATGATTTACGATCCCTGGAAAATTACCACTTTGT
AGATGAGCATGGTAAGGATCAAGGTATAAATATTCGACAGAAGGTGAAGGAATTGGTTGAATTTGCCCAG
GATGACGACAGGCTTCGTGAAGAGCGAAAGAAAGCAAAGAAGAACAAAGACAAGTATGTTGGGGTTTCCT
CAGACAGTGTTGGAGGATTCAGATACAGTGAAAGATATGATCCTGAGCCCAAATCAAAATGGGATGAGGA
GTGGGATAAAAACAAGAGTGCTTTTCCATTCAGTGATAAATTAGGTGAGCTGAGTGATAAAATTGGAAGC
ACAATTGATGACACCATCAGCAAGTTCCGGAGGAAAGATAGAGAAGACTCTCCAGAAAGATGCAGCGACA
GCGATGAGGAAAAGAAAGCGAGAAGAGGCAGATCTCCCAAAGGTGAATTCAAAGATGAAGAGGAGACTGT
GACGACAAAGCATATTCATATCACACAGGCCACAGAGACCACCACAACCAGACACAAGCGCACAGCAAAT
CCTTCCAAAACCATTGATCTTGGAGCAGCAGCACATTACACAGGGGACAAAGCAAGTCCAGATCAGAATG
CTTCAACCCACACACCTCAGTCTTCAGTTAAGACTTCAGTGCCTAGCAGCAAGTCATCTGGTGACCTTGT
TGATCTGTTTGATGGCACCAGCCAGTCAACAGGAGGATCAGCTGATTTATTCGGAGGATTTGCTGACTTT
GGCTCAGCTGCTGCATCAGGCAGTTTCCCTTCCCAAGTAACAGCAACAAGTGGGAATGGAGACTTTGGTG
ACTGGAGTGCCTTCAACCAAGCCCCATCAGGCCCTGTTGCTTCCAGTGGCGAGTTCTTTGGCAGTGCCTC
ACAGCCAGCGGTAGAACTTGTTAGTGGCTCACAATCAGCTCTAGGCCCACCTCCTGCTGCCTCAAATTCT
TCAGACCTGTTTGATCTTATGGGCTCGTCCCAGGCAACCATGACATCTTCCCAGAGTATGAATTTCTCTA
TGATGAGCACTAACACTGTGGGACTTGGTTTGCCTATGTCAAGATCACAGCCTTTGCAAAATGTTAGCAC
AGTGCTGCAGAAGCCTAATCCTCTCTATAATCAGAATACAGATATGGTCCAGAAATCAGTCAGCAAAACC
TTGCCCTCTACTTGGTCTGACCCCAGTGTAAACATCAGCCTAGACAACTTACTACCTGGTATGCAGCCTT
CCAAACCCCAGCAGCCATCACTGAATACAATGATTCAGCAACAGAATATGCAGCAGCCTATGAATGTGAT
GACTCAAAGTTTTGGAGCTGTGAACCTCAGTTCTCCATCGAACATGCTTCCTGTCCGGCCCCAAACTAAT
GCTTTGATAGGGGGACCCATGCCTATGAGCATGCCCAATGTGATGACTGGCACCATGGGAATGGCCCCTC
TTGGAAATACTCCGATGATGAACCAGAGCATGATGGGCATGAACATGAACATAGGGATGTCCGCTGCTGG
GATGGGCTTGACAGGCACAATGGGAATGGGCATGCCCAACATAGCCATGACTTCTGGAACTGTGCAACCC
AAGCAAGATGCCTTTGCAAATTTCGCCAATTTTAGCAAATAA

Translation (643 aa):
MLNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLK
DNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQ
DDDRLREERKKAKKNKDKYVGVSSDSVGGFRYSERYDPEPKSKWDEEWDKNKSAFPFSDKLGELSDKIGS
TIDDTISKFRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHIHITQATETTTTRHKRTAN
PSKTIDLGAAAHYTGDKASPDQNASTHTPQSSVKTSVPSSKSSGDLVDLFDGTSQSTGGSADLFGGFADF
GSAAASGSFPSQVTATSGNGDFGDWSAFNQAPSGPVASSGEFFGSASQPAVELVSGSQSALGPPPAASNS
SDLFDLMGSSQATMTSSQSMNFSMMSTNTVGLGLPMSRSQPLQNVSTVLQKPNPLYNQNTDMVQKSVSKT
LPSTWSDPSVNISLDNLLPGMQPSKPQQPSLNTMIQQQNMQQPMNVMTQSFGAVNLSSPSNMLPVRPQTN
ALIGGPMPMSMPNVMTGTMGMAPLGNTPMMNQSMMGMNMNIGMSAAGMGLTGTMGMGMPNIAMTSGTVQP
KQDAFANFANFSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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