NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56296.1 Public Homo sapiens 3 ZBBX 24 110 108 CCDS HistoryNCBI Gene:79740Re-query CCDS DB by CCDS ID:56296.1Re-query CCDS DB by GeneID:79740See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307529.9 ENSP00000305065.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307529.9Link to Ensembl Protein Viewer:ENSP00000305065.5Re-query CCDS DB by Nucleotide ID:ENST00000307529Re-query CCDS DB by Protein ID:ENSP00000305065
Original member Current member EBI ENST00000675490.1 ENSP00000502603.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000675490.1Link to Ensembl Protein Viewer:ENSP00000502603.1Re-query CCDS DB by Nucleotide ID:ENST00000675490Re-query CCDS DB by Protein ID:ENSP00000502603
Original member Current member NCBI NM_001199201.2 NP_001186130.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199201.2Link to Protein Sequence:NP_001186130.1Re-query CCDS DB by Nucleotide ID:NM_001199201Re-query CCDS DB by Protein ID:NP_001186130Link to BLAST:NP_001186130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186130.1 839 A8MT70-2 839 100% 0 0

Chromosomal Locations for CCDS 56296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 167240793 167240919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167242505 167242643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167282238 167282495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167288867 167288983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167298305 167298458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167305643 167305950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167313974 167314116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167315750 167315829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167317005 167317105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167317488 167317597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167322117 167322237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167327942 167328116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167333827 167333985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167350420 167350515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167359870 167359979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167360675 167360723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167365886 167365976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167368461 167368574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 167372834 167372901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGAACAGAAAAGATTTTGTAGTTCTTCCATGGGGAAAACCTGGAAATTCTGTAAAGCTAAAATATAGAA
ATGCTCAAGAACTGCGAATGGAGAAAGTACAGTTAGAGTTTGAGAACCAAGAGATGGAGAAGAAACTGCA
AGAATTCCGATCCACAAGAAACAAAGAAAAGGAAGATAGAGAGTCAAGCGAGTATTACTGGAAATCTGGA
AAAGTGGGCAAATTGGTCAATCAATCATATATGATGTCACAAAATAAAGGAAATGTTGTTAAGTTTTCTG
CTGGAAAAGTGAAATTAAAATTGCTGAAGGAACAGATTCAAGAGCCAGTGAAACCAACAGTTAATTATAA
AATGGCAAATTCTTCAGAATGTGAAAAACCCAAGATAAATGGGAAAGTATGTGGACAGTGTGAGAACAAA
GCTGCTCTACTGGTATGCCTTGAATGTGGAGAAGATTATTGTTCAGGATGCTTTGCTAAAGTTCACCAGA
AAGGGGCACTAAAGCTCCACAGAACAACTCTTTTGCAGGCAAAATCTCAAATATTATTCAATGTATTGGA
TGTTGCCCATCAGTTTATAAAGGATGTTAATCCAGATGAACCCAAAGAGGAGAATAATTCTACAAAGGAA
ACCAGTAAAATTCAACATAAACCCAAATCTGTACTTCTCCAGAGGAGCAGCTCTGAGGTAGAAATTACAA
CGATGAAAAGAGCACAACGTACAAAACCAAGAAAGAGTCTGTTGTGTGAAGGGTCATTCGATGAAGAAGC
TTCTGCACAGTCCTTTCAGGAAGTGTTAAGTCAATGGAGAACCGGAAATCATGATGACAACAAGAAACAG
AATTTACATGCAGCAGTAAAAGACTCATTGGAAGAATGCGAAGTACAGACTAATCTGAAAATTTGGAGAG
AACCACTTAATATTGAACTTAAAGAAGACATTCTATCCTATATGGAAAAATTATGGCTTAAAAAACACAG
GAGAACTCCACAAGAGCAACTTTTTAAAATGCTACCAGATACGTTCCCACATCCACATGAAACCACTGGT
GATGCACAGTGTTCTCAAAATGAAAACGATGAAGATAGTGATGGTGAGGAGACCAAAGTACAACACACAG
CTCTTTTATTGCCAGTAGAAACATTAAACATAGAGAGACCTGAACCATCTCTAAAGATAGTCGAACTGGA
TGATACTTATGAAGAGGAATTTGAAGAAGCAGAAAATATTGTGCCTTACAAAGTTAAATTAGCTGATGCA
GACAGTCAACGAAGTTGTGCTTTTCATGATTGTCAGAAGAATAGCTTTCCATATGAAAATGGCATCCATC
AACATCATGTTTTCGATAAGGGAAAGAGAGACTTCTTAAATCTTTGTCTGAGAAACAGCTCTACTTATTA
TAAAGATAATTCAAAAGCAGAAACTTCAAACACAGATTTTGACAACATCGTGGATCCTGATGTGTATTCT
TCTGACATTGAAAAAATTGAGGAAAGCACCTCCTTTGAAAGAAATTTAAAGGAGAAAAATATAGGTTTAG
AAAGTAATCAAAAGTCTGATGATTCCTGTGTATCACTTGAAAGCAAGGACACTTTGCTAGGTAGAGATTT
AGAAAAAGCTCCCATTGAGGAGAAATTATCTCAAGACATCAAAGAATCCTTGGAATTGAGCAATCTGTAT
AAGAGGCCAAGCTTTGAAGAATCAAAAACTACAAAGTCATCACTGTTGTTACAAGAAATAGCCTGCAGAA
GTAAGCCTATAACAAAACAATATCAAGGACTTGAGAGATTCTTTATTTTTGATACAAATGAAAGACTCAA
CTTACTTCCTTCTCATCGTTTAGAATGCAACAATTCCAGTACTAGGATTACACTTGCAGAAGACAGAGAA
TGGATTCCAGACCATAGCTTAAGTGAATATGCTGATAATGCAATTGTCTTGGGTGTTCTGCAGGGTGCTC
AGAGTCCATCATCAAGTAGAAAACAGCAAAAGATGGGTCAGAAATCACAGAGACCTTCAACAGCAAATTT
TCCACTTTCCAACTCTGTTAAAGAAAGCTCCAGTTGCCTTTCATCCTCTCATCCTCGATCAAGAAGTGCA
GCTGCTCAATCATCATCTAGAGCTGCTTCTGAAATTTCAGAAATTGAATATATTGATATTACTGACCAGA
ATGAGCTTTCCTTAGATGACACTACTGATCAACATACTTTAGACAATTTGGAAAAAGAATTACAAGTGCT
GAGATCTCTTGCAGATACTTCAGAAAAGCTTTACAGCTTAACCTCAGAAGAGTTCCCAGATTTCAGCAGC
CAATCACTGAATATAAGTCAGATTTCCACAGATTTCCTTAAGACCTCACATGTGAGGGGTCCCTGTGGAG
TTGAGGAATTGAGCTGTTCTGGAAGAGATACCAAAATTCAGTCTTTGCTGTCACTTTCTGAGAGCAGTAC
AGATGAGGAGGAGGAAGATTTTCTCAACAAGCAACATGTCATCACACTACCGTGGTCAAAGAGTACTTAA

Translation (839 aa):
MNRKDFVVLPWGKPGNSVKLKYRNAQELRMEKVQLEFENQEMEKKLQEFRSTRNKEKEDRESSEYYWKSG
KVGKLVNQSYMMSQNKGNVVKFSAGKVKLKLLKEQIQEPVKPTVNYKMANSSECEKPKINGKVCGQCENK
AALLVCLECGEDYCSGCFAKVHQKGALKLHRTTLLQAKSQILFNVLDVAHQFIKDVNPDEPKEENNSTKE
TSKIQHKPKSVLLQRSSSEVEITTMKRAQRTKPRKSLLCEGSFDEEASAQSFQEVLSQWRTGNHDDNKKQ
NLHAAVKDSLEECEVQTNLKIWREPLNIELKEDILSYMEKLWLKKHRRTPQEQLFKMLPDTFPHPHETTG
DAQCSQNENDEDSDGEETKVQHTALLLPVETLNIERPEPSLKIVELDDTYEEEFEEAENIVPYKVKLADA
DSQRSCAFHDCQKNSFPYENGIHQHHVFDKGKRDFLNLCLRNSSTYYKDNSKAETSNTDFDNIVDPDVYS
SDIEKIEESTSFERNLKEKNIGLESNQKSDDSCVSLESKDTLLGRDLEKAPIEEKLSQDIKESLELSNLY
KRPSFEESKTTKSSLLLQEIACRSKPITKQYQGLERFFIFDTNERLNLLPSHRLECNNSSTRITLAEDRE
WIPDHSLSEYADNAIVLGVLQGAQSPSSSRKQQKMGQKSQRPSTANFPLSNSVKESSSCLSSSHPRSRSA
AAQSSSRAASEISEIEYIDITDQNELSLDDTTDQHTLDNLEKELQVLRSLADTSEKLYSLTSEEFPDFSS
QSLNISQISTDFLKTSHVRGPCGVEELSCSGRDTKIQSLLSLSESSTDEEEEDFLNKQHVITLPWSKST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH