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Report for CCDS55798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55798.1 Public Homo sapiens 11 TP53AIP1 24 110 108 CCDS HistoryNCBI Gene:63970Re-query CCDS DB by CCDS ID:55798.1Re-query CCDS DB by GeneID:63970See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530777.5 ENSP00000432908.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530777.5Link to Ensembl Protein Viewer:ENSP00000432908.1Re-query CCDS DB by Nucleotide ID:ENST00000530777Re-query CCDS DB by Protein ID:ENSP00000432908
Original member Current member NCBI NM_001195194.1 NP_001182123.1 Accepted alive Link to Nucleotide Sequence:NM_001195194.1Link to Protein Sequence:NP_001182123.1Re-query CCDS DB by Nucleotide ID:NM_001195194Re-query CCDS DB by Protein ID:NP_001182123Link to BLAST:NP_001182123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182123.1 120 Q9HCN2-4 120 100% 0 0

Chromosomal Locations for CCDS 55798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 128935591 128935700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 128936538 128936649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 128937678 128937818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGGATCTTCCTCTGAGGCGAGCTTCAGATCTGCTCAAGCTTCCTGCAGTGGGGCCAGGAGGCAGGGCC
TGGGCAGGGGAGACCAGAACCTCTCGGTGATGCCTCCGAATGGCAGGGCTCAGACACACACACCTGGCTG
GGTTTCAGATCCCTTAGTTTTGGGTGCCCAAGTTCACGGAGGGTGCCGGGGAATAGAAGCTCTGTCAGTC
TCGTCTGGATCTTGGTCCTCAGCAACTGTCTGGATCCTGACAGGTCTCTCCAGGCCTTTCCTTCCTGGAG
CCACAGTGCTTAGAGACAGGCCACTGGGGTCAGCATTTGAGCTCAGCTATGATCAGAAAAAAGCACCGTT
GAGGTTGCAGTGA

Translation (120 aa):
MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHGGCRGIEALSV
SSGSWSSATVWILTGLSRPFLPGATVLRDRPLGSAFELSYDQKKAPLRLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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