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Report for CCDS55748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55748.1 Public Homo sapiens 11 NCR3LG1 24 110 108 CCDS HistoryNCBI Gene:374383Re-query CCDS DB by CCDS ID:55748.1Re-query CCDS DB by GeneID:374383See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55748.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338965.9 ENSP00000341637.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338965.9Link to Ensembl Protein Viewer:ENSP00000341637.4Re-query CCDS DB by Nucleotide ID:ENST00000338965Re-query CCDS DB by Protein ID:ENSP00000341637
Original member Current member EBI ENST00000530403.1 ENSP00000434394.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530403.1Link to Ensembl Protein Viewer:ENSP00000434394.1Re-query CCDS DB by Nucleotide ID:ENST00000530403Re-query CCDS DB by Protein ID:ENSP00000434394
Original member Current member NCBI NM_001202439.3 NP_001189368.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001202439.3Link to Protein Sequence:NP_001189368.1Re-query CCDS DB by Nucleotide ID:NM_001202439Re-query CCDS DB by Protein ID:NP_001189368Link to BLAST:NP_001189368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001189368.1 454 Q68D85 454 100% 0 0

Chromosomal Locations for CCDS 55748.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 17351970 17352039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17356651 17357001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17367009 17367347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17368867 17368964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17372006 17372512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGACGTGGAGGGCTGCCGCCTCCACGTGCGCGGCGCTCCTGATTCTGCTGTGGGCGCTGACGACCGAAG
GTGATCTGAAAGTAGAGATGATGGCAGGGGGGACTCAGATCACACCCCTGAATGACAATGTCACCATATT
CTGCAATATCTTTTATTCCCAACCCCTCAACATCACGTCTATGGGTATCACCTGGTTTTGGAAGAGTCTG
ACGTTTGACAAAGAAGTCAAAGTCTTTGAATTTTTTGGAGATCACCAAGAGGCATTCCGACCTGGAGCCA
TTGTGTCTCCATGGAGGCTGAAGAGTGGGGACGCCTCACTGCGGCTGCCTGGAATCCAGCTGGAGGAAGC
AGGAGAGTACCGATGTGAGGTGGTGGTCACCCCTCTGAAGGCACAGGGAACAGTCCAGCTTGAAGTTGTG
GCTTCCCCAGCCAGCAGATTGTTGCTGGATCAAGTGGGCATGAAAGAGAATGAAGACAAATATATGTGTG
AGTCAAGTGGGTTCTACCCAGAGGCTATTAATATAACATGGGAGAAGCAGACCCAGAAGTTTCCCCATCC
CATAGAGATTTCTGAGGATGTCATCACTGGTCCCACCATCAAGAATATGGATGGCACATTTAATGTCACT
AGCTGCTTGAAGCTGAACTCCTCTCAGGAAGACCCTGGGACTGTCTACCAGTGTGTGGTACGGCATGCGT
CCTTGCATACCCCCTTGAGGAGCAACTTTACCCTGACTGCTGCTCGGCACAGTCTTTCTGAAACTGAGAA
GACAGATAATTTTTCCATTCATTGGTGGCCTATTTCATTCATTGGTGTTGGACTGGTTTTATTAATTGTT
TTGATTCCTTGGAAAAAGATATGTAACAAATCATCTTCAGCCTATACTCCTCTCAAGTGCATTCTGAAAC
ACTGGAACTCCTTTGACACTCAGACTCTGAAGAAAGAGCACCTCATATTCTTTTGCACTCGGGCATGGCC
GTCTTACCAGCTGCAGGATGGGGAGGCTTGGCCTCCTGAGGGAAGTGTTAATATTAATACTATTCAACAA
CTAGATGTTTTCTGCAGACAGGAGGGCAAATGGTCCGAGGTTCCTTATGTGCAAGCCTTCTTTGCCTTGC
GAGACAACCCAGATCTTTGTCAGTGTTGTAGAATTGACCCTGCTCTCCTAACAGTTACATCAGGCAAGTC
CATAGATGATAATTCCACAAAGTCTGAGAAACAAACCCCTAGGGAACACTCGGATGCAGTTCCGGATGCC
CCAATCCTTCCTGTCTCCCCTATCTGGGAACCTCCTCCAGCCACAACATCAACAACTCCAGTTCTATCCT
CCCAACCCCCAACTTTACTGTTACCCCTACAGTAA

Translation (454 aa):
MTWRAAASTCAALLILLWALTTEGDLKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSL
TFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV
ASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVT
SCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETEKTDNFSIHWWPISFIGVGLVLLIV
LIPWKKICNKSSSAYTPLKCILKHWNSFDTQTLKKEHLIFFCTRAWPSYQLQDGEAWPPEGSVNINTIQQ
LDVFCRQEGKWSEVPYVQAFFALRDNPDLCQCCRIDPALLTVTSGKSIDDNSTKSEKQTPREHSDAVPDA
PILPVSPIWEPPPATTSTTPVLSSQPPTLLLPLQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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