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Report for CCDS552.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
552.2 Public Homo sapiens 1 BEND5 24 110 108 CCDS HistoryNCBI Gene:79656Re-query CCDS DB by CCDS ID:552.2Re-query CCDS DB by GeneID:79656See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 552.1
The coding region has been updated to represent an alternative 5' splice site, resulting in the extension of the N-terminus to one that is better supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 552.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371833.4 ENSP00000360899.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371833.4Link to Ensembl Protein Viewer:ENSP00000360899.3Re-query CCDS DB by Nucleotide ID:ENST00000371833Re-query CCDS DB by Protein ID:ENSP00000360899
Original member Current member NCBI NM_024603.4 NP_078879.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024603.4Link to Protein Sequence:NP_078879.2Re-query CCDS DB by Nucleotide ID:NM_024603Re-query CCDS DB by Protein ID:NP_078879Link to BLAST:NP_078879.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078879.2 421 Q7L4P6-1 421 100% 0 0

Chromosomal Locations for CCDS 552.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 48727886 48728043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48736239 48736452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48742623 48742771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48758900 48759284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48761337 48761470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 48776606 48776831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGTACGCCTTTGTGCGGTTCCTGGAGGACAACGTCTGCTACGCGCTGCCCGTGTCGTGCGTGCGCGACT
TCAGCCCCCGCTCGCGGCTGGATTTTGACAACCAGAAGGTGTACGCCGTGTACCGGGGCCCGGAGGAATT
GGGCGCCGGGCCCGAGAGCCCCCCGCGCGCCCCCCGCGACTGGGGCGCGCTGTTGCTCCACAAGGCCCAG
ATCCTGGCGCTGGCAGAAGACAAATCTGACCTTGAAAACAGTGTGATGCAGAAGAAAATAAAAATCCCCA
AGCTTTCTCTTAATCATGTAGAAGAAGATGGAGAGGTTAAAGATTATGGGGAAGAAGATTTACAGCTTAG
ACACATCAAGAGACCTGAGGGGCGGAAGCCGAGCGAAGTGGCGCACAAGAGCATCGAGGCAGTGGTGGCT
CGGCTAGAGAAGCAGAACGGCCTGAGCCTGGGCCATAGCACGTGTCCGGAAGAGGTCTTCGTGGAGGCCT
CGCCAGGCACAGAGGACATGGACAGTCTAGAAGATGCTGTGGTGCCCCGGGCTCTGTATGAGGAGCTGCT
GCGCAACTACCAGCAGCAACAGGAAGAGATGCGCCACCTCCAGCAGGAGCTGGAGCGGACTCGGAGGCAG
CTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGCTCCGTGACC
TTAACCGGAGGCTCCAGGACGTGCTGCTCCTGCGGCTTGGCAGCGGTCCCGCCATTGATCTGGAAAAAGT
AAAGTCAGAATGTCTCGAGCCCGAGCCGGAGTTACGGAGCACTTTCAGTGAGGAAGCAAATACGTCGTCC
TATTACCCCGCTCCTGCGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAGGTCCATCTGGGAAGCG
GGATTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAA
CTTGGCAGTTATGATTTGGGGAACAGATGTTCTGAAAAACAGAAGCGTCACAGGCGTCGCCACAAAAAAA
AAGAAAGATGCAGTCCCTAAACCACCCCTCTCGCCTCACAAACTAAGCATCGTCAGAGAGTGTTTGTATG
ACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACAT
CTGTGAAAAAATCATGGATATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTG
CAATAA

Translation (421 aa):
MYAFVRFLEDNVCYALPVSCVRDFSPRSRLDFDNQKVYAVYRGPEELGAGPESPPRAPRDWGALLLHKAQ
ILALAEDKSDLENSVMQKKIKIPKLSLNHVEEDGEVKDYGEEDLQLRHIKRPEGRKPSEVAHKSIEAVVA
RLEKQNGLSLGHSTCPEEVFVEASPGTEDMDSLEDAVVPRALYEELLRNYQQQQEEMRHLQQELERTRRQ
LVQQAKKLKEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRSTFSEEANTSS
YYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWGTDVLKNRSVTGVATKK
KKDAVPKPPLSPHKLSIVRECLYDRIAQETVDETEIAQRLSKVNKYICEKIMDINKSCKNEERREAKYNL
Q


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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