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Report for CCDS54932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54932.1 Public Homo sapiens 5 AFAP1L1 24 110 108 CCDS HistoryNCBI Gene:134265Re-query CCDS DB by CCDS ID:54932.1Re-query CCDS DB by GeneID:134265See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54932.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515000.1 ENSP00000424427.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515000.1Link to Ensembl Protein Viewer:ENSP00000424427.1Re-query CCDS DB by Nucleotide ID:ENST00000515000Re-query CCDS DB by Protein ID:ENSP00000424427
Original member Current member NCBI NM_001146337.3 NP_001139809.1 Accepted alive Link to Nucleotide Sequence:NM_001146337.3Link to Protein Sequence:NP_001139809.1Re-query CCDS DB by Nucleotide ID:NM_001146337Re-query CCDS DB by Protein ID:NP_001139809Link to BLAST:NP_001139809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139809.1 725 Q8TED9-2 725 100% 0 0

Chromosomal Locations for CCDS 54932.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149271969 149271984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149299509 149299637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149300271 149300354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149301133 149301230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149302418 149302526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149306306 149306404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149307402 149307613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149309956 149310135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149312112 149312204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149315821 149315914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149316151 149316303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149317729 149317940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149319582 149319727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149320391 149320463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149322606 149322717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149329666 149329830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149332695 149332873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149340007 149340030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGACCGAGGCCAGGTGCTGGAGCAGCTGCTCCCAGAGCTCACCGGGCTGCTCAGCCTCCTGGACCACG
AGTACCTCAGCGATACCACCCTGGAAAAGAAGATGGCCGTGGCCTCCATCCTGCAGAGCCTGCAGCCCCT
TCCAGCAAAGGAGGTCTCCTACCTGTATGTGAACACAGCAGACCTCCACTCGGGGCCCAGCTTCGTGGAA
TCCCTCTTTGAAGAATTTGACTGTGACCTGAGTGACCTTCGGGACATGCCAGAGGATGATGGGGAGCCCA
GCAAAGGAGCCAGCCCTGAGCTAGCCAAGAGCCCACGCCTGAGAAACGCGGCCGACCTGCCTCCACCGCT
CCCCAACAAGCCTCCCCCTGAGGACTACTATGAAGAGGCCCTTCCTCTGGGACCCGGCAAGTCGCCTGAG
TACATCAGCTCCCACAATGGCTGCAGCCCCTCACACTCGATTGTGGATGGCTACTATGAGGACGCAGACA
GCAGCTACCCTGCAACCAGGGTGAACGGCGAGCTTAAGAGCTCCTATAATGACTCTGACGCAATGAGCAG
CTCCTATGAGTCCTACGATGAAGAGGAGGAGGAAGGGAAGAGCCCGCAGCCCCGACACCAGTGGCCCTCA
GAGGAGGCCTCCATGCACCTGGTGAGGGAATGCAGGATATGTGCCTTCCTGCTGCGGAAAAAGCGTTTCG
GGCAGTGGGCCAAGCAGCTGACGGTCATCAGGGAGGACCAGCTCCTGTGTTACAAAAGCTCCAAGGATCG
GCAGCCACATCTGAGGTTGGCACTGGATACCTGCAGCATCATCTACGTGCCCAAGGACAGCCGGCACAAG
AGGCACGAGCTGCGTTTCACCCAGGGGGCTACCGAGGTCTTGGTGCTGGCACTGCAGAGCCGAGAGCAGG
CCGAGGAGTGGCTGAAGGTCATCCGAGAAGTGAGCAAGCCAGTTGGGGGAGCTGAGGGAGTGGAGGTCCC
CAGATCCCCAGTCCTCCTGTGCAAGTTGGACCTGGACAAGAGGCTGTCCCAAGAGAAGCAGACCTCAGAT
TCTGACAGCGTGGGTGTGGGTGACAACTGTTCTACCCTTGGCCGCCGGGAGACCTGTGATCACGGCAAAG
GGAAGAAGAGCAGCCTGGCAGAACTGAAGGGCTCAATGAGCAGGGCTGCGGGCCGCAAGATCACCCGTAT
CATTGGCTTCTCCAAGAAGAAGACACTGGCCGATGACCTGCAGACGTCCTCCACCGAGGAGGAGGTTCCC
TGCTGTGGCTACCTGAACGTGCTGGTGAACCAGGGCTGGAAGGAACGCTGGTGCCGCCTGAAGTGCAACA
CTCTGTATTTCCACAAGGATCACATGGACCTGCGAACCCATGTGAACGCCATCGCCCTGCAAGGCTGTGA
GGTGGCCCCGGGCTTTGGGCCCCGACACCCATTTGCCTTCAGGATCCTGCGCAACCGGCAGGAGGTGGCC
ATCTTGGAGGCAAGCTGTTCAGAGGACATGGGTCGCTGGCTCGGGCTGCTGCTGGTGGAGATGGGCTCCA
GAGTCACTCCGGAGGCGCTGCACTATGACTACGTGGATGTGGAGACCTTAACCAGCATCGTCAGTGCTGG
GCGCAACTCCTTCCTATATGCAAGATCCTGCCAGAATCAGTGGCCTGAGCCCCGAGTCTATGATGATGTT
CCTTATGAAAAGATGCAGGACGAGGAGCCCGAGCGCCCCACAGGGGCCCAGGTGAAGCGTCACGCCTCCT
CCTGCAGTGAGAAGTCCCATCGTGTGGACCCGCAGGTCAAAGTCAAACGCCACGCCTCCAGTGCCAATCA
ATACAAGTATGGCAAGAACCGAGCCGAGGAGGATGCCCGGAGGTACTTGGTAGAAAAAGAGAAGCTGGAG
AAAGAGAAAGAGACGATTCGGACAGAGCTGATAGCACTGAGACAGGAGAAGAGGGAACTGAAGGAAGCCA
TTCGGAGCAGCCCAGGAGCAAAATTAAAGGCTCTGGAAGAAGCCGTGGCCACCCTGGAAGCTCAGTGTCG
GGCAAAGGAGGAGCGCCGGATTGACCTGGAGCTGAAGCTGGTGGCTGTGAAGGAGCGCTTGCAGCAGTCC
CTGGCAGGAGGGCCAGCCCTGGGGCTCTCCGTGAGCAGCAAGCCCAAGAGTGGGGAATGGGAAATGAAGA
AGACCTAG

Translation (725 aa):
MDRGQVLEQLLPELTGLLSLLDHEYLSDTTLEKKMAVASILQSLQPLPAKEVSYLYVNTADLHSGPSFVE
SLFEEFDCDLSDLRDMPEDDGEPSKGASPELAKSPRLRNAADLPPPLPNKPPPEDYYEEALPLGPGKSPE
YISSHNGCSPSHSIVDGYYEDADSSYPATRVNGELKSSYNDSDAMSSSYESYDEEEEEGKSPQPRHQWPS
EEASMHLVRECRICAFLLRKKRFGQWAKQLTVIREDQLLCYKSSKDRQPHLRLALDTCSIIYVPKDSRHK
RHELRFTQGATEVLVLALQSREQAEEWLKVIREVSKPVGGAEGVEVPRSPVLLCKLDLDKRLSQEKQTSD
SDSVGVGDNCSTLGRRETCDHGKGKKSSLAELKGSMSRAAGRKITRIIGFSKKKTLADDLQTSSTEEEVP
CCGYLNVLVNQGWKERWCRLKCNTLYFHKDHMDLRTHVNAIALQGCEVAPGFGPRHPFAFRILRNRQEVA
ILEASCSEDMGRWLGLLLVEMGSRVTPEALHYDYVDVETLTSIVSAGRNSFLYARSCQNQWPEPRVYDDV
PYEKMQDEEPERPTGAQVKRHASSCSEKSHRVDPQVKVKRHASSANQYKYGKNRAEEDARRYLVEKEKLE
KEKETIRTELIALRQEKRELKEAIRSSPGAKLKALEEAVATLEAQCRAKEERRIDLELKLVAVKERLQQS
LAGGPALGLSVSSKPKSGEWEMKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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