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Report for CCDS54842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54842.1 Public Homo sapiens 5 UGT3A2 24 110 108 CCDS HistoryNCBI Gene:167127Re-query CCDS DB by CCDS ID:54842.1Re-query CCDS DB by GeneID:167127See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54842.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513300.5 ENSP00000427404.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513300.5Link to Ensembl Protein Viewer:ENSP00000427404.1Re-query CCDS DB by Nucleotide ID:ENST00000513300Re-query CCDS DB by Protein ID:ENSP00000427404
Original member Current member NCBI NM_001168316.2 NP_001161788.1 Accepted alive Link to Nucleotide Sequence:NM_001168316.2Link to Protein Sequence:NP_001161788.1Re-query CCDS DB by Nucleotide ID:NM_001168316Re-query CCDS DB by Protein ID:NP_001161788Link to BLAST:NP_001161788.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161788.1 489 Q3SY77-2 489 100% 0 0

Chromosomal Locations for CCDS 54842.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36035698 36035974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36037797 36038016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36039477 36039708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36048889 36049420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36051870 36051984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36066696 36066789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGCTGGGCAGCGAGTGCTTCTTCTAGTGGGCTTCCTTCTCCCTGGGGTCCTGCTCTCAGAGGCTGCCA
AAATCCTGACAATATCTACAGTAGATTTTAAAAAGGAAGAAAAATCATATCAAGTTATCAGTTGGCTTGC
ACCTGAAGATCATCAAAGAGAATTTAAAAAGAGTTTTGATTTCTTTCTGGAAGAAACTTTAGGTGGCAGA
GGAAAATTTGAAAACTTATTAAATGTTCTAGAATACTTGGCGTTGCAGTGCAGTCATTTTTTAAATAGAA
AGGATATCATGGATTCCTTAAAGAATGAGAACTTCGACATGGTGATAGTTGAAACTTTTGACTACTGTCC
TTTCCTGATTGCTGAGAAGCTTGGGAAGCCATTTGTGGCCATTCTTTCCACTTCATTCGGCTCTTTGGAA
TTTGGGCTACCAATCCCCTTGTCTTATGTTCCAGTATTCCGTTCCTTGCTGACTGATCACATGGACTTCT
GGGGCCGAGTGAAGAATTTTCTGATGTTCTTTAGTTTCTGCAGGAGGCAACAGCACATGCAGTCTACATT
TGACAACACCATCAAGGAACATTTCACAGAAGGCTCTAGGCCAGTTTTGTCTCATCTTCTACTGAAAGCA
GAGTTGTGGTTCATTAACTCTGACTTTGCCTTTGATTTTGCTCGACCTCTGCTTCCCAACACTGTTTATG
TTGGAGGCTTGATGGAAAAACCTATTAAACCAGTACCACAAGACTTGGAGAACTTCATTGCCAAGTTTGG
GGACTCTGGTTTTGTCCTTGTGACCTTGGGCTCCATGGTGAACACCTGTCAGAATCCGGAAATCTTCAAG
GAGATGAACAATGCCTTTGCTCACCTACCCCAAGGGGTGATATGGAAGTGTCAGTGTTCTCATTGGCCCA
AAGATGTCCACCTGGCTGCAAATGTGAAAATTGTGGACTGGCTTCCTCAGAGTGACCTCCTGGCTCACCC
AAGCATCCGTCTGTTTGTCACCCACGGCGGGCAGAATAGCATAATGGAGGCCATCCAGCATGGTGTGCCC
ATGGTGGGGATCCCTCTCTTTGGAGACCAGCCTGAAAACATGGTCCGAGTAGAAGCCAAAAAGTTTGGTG
TTTCTATTCAGTTAAAGAAGCTCAAGGCAGAGACATTGGCTCTTAAGATGAAACAAATCATGGAAGACAA
GAGATACAAGTCCGCGGCAGTGGCTGCCAGTGTCATCCTGCGCTCCCACCCGCTCAGCCCCACACAGCGG
CTGGTGGGCTGGATTGACCACGTCCTCCAGACAGGGGGCGCGACGCACCTCAAGCCCTATGTCTTTCAGC
AGCCCTGGCATGAGCAGTACCTGCTCGACGTTTTTGTGTTTCTGCTGGGGCTCACTCTGGGGACTCTATG
GCTTTGTGGGAAGCTGCTGGGCATGGCTGTCTGGTGGCTGCGTGGGGCCAGAAAGGTGAAGGAGACATAA

Translation (489 aa):
MAGQRVLLLVGFLLPGVLLSEAAKILTISTVDFKKEEKSYQVISWLAPEDHQREFKKSFDFFLEETLGGR
GKFENLLNVLEYLALQCSHFLNRKDIMDSLKNENFDMVIVETFDYCPFLIAEKLGKPFVAILSTSFGSLE
FGLPIPLSYVPVFRSLLTDHMDFWGRVKNFLMFFSFCRRQQHMQSTFDNTIKEHFTEGSRPVLSHLLLKA
ELWFINSDFAFDFARPLLPNTVYVGGLMEKPIKPVPQDLENFIAKFGDSGFVLVTLGSMVNTCQNPEIFK
EMNNAFAHLPQGVIWKCQCSHWPKDVHLAANVKIVDWLPQSDLLAHPSIRLFVTHGGQNSIMEAIQHGVP
MVGIPLFGDQPENMVRVEAKKFGVSIQLKKLKAETLALKMKQIMEDKRYKSAAVAASVILRSHPLSPTQR
LVGWIDHVLQTGGATHLKPYVFQQPWHEQYLLDVFVFLLGLTLGTLWLCGKLLGMAVWWLRGARKVKET


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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