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Report for CCDS54806.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54806.2 Public Homo sapiens 4 SCOC 24 110 108 CCDS HistoryNCBI Gene:60592Re-query CCDS DB by CCDS ID:54806.2Re-query CCDS DB by GeneID:60592See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 54806.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502535.1 ENSP00000421355.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502535.1Link to Ensembl Protein Viewer:ENSP00000421355.1Re-query CCDS DB by Nucleotide ID:ENST00000502535Re-query CCDS DB by Protein ID:ENSP00000421355
Original member Current member EBI ENST00000512749.5 ENSP00000424605.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512749.5Link to Ensembl Protein Viewer:ENSP00000424605.1Re-query CCDS DB by Nucleotide ID:ENST00000512749Re-query CCDS DB by Protein ID:ENSP00000424605
Original member Current member EBI ENST00000510586.5 ENSP00000424688.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510586.5Link to Ensembl Protein Viewer:ENSP00000424688.2Re-query CCDS DB by Nucleotide ID:ENST00000510586Re-query CCDS DB by Protein ID:ENSP00000424688
Original member Current member EBI ENST00000506322.5 ENSP00000426810.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506322.5Link to Ensembl Protein Viewer:ENSP00000426810.1Re-query CCDS DB by Nucleotide ID:ENST00000506322Re-query CCDS DB by Protein ID:ENSP00000426810
Original member Current member EBI ENST00000608372.6 ENSP00000477352.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000608372.6Link to Ensembl Protein Viewer:ENSP00000477352.2Re-query CCDS DB by Nucleotide ID:ENST00000608372Re-query CCDS DB by Protein ID:ENSP00000477352
Original member Current member NCBI NM_001153484.2 NP_001146956.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001153484.2Link to Protein Sequence:NP_001146956.2Re-query CCDS DB by Nucleotide ID:NM_001153484Re-query CCDS DB by Protein ID:NP_001146956Link to BLAST:NP_001146956.2

Chromosomal Locations for CCDS 54806.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140379171 140379192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140379569 140379652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140380962 140381104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (249 nt):
ATGATGAATGCTGACATGGATGCAGTTGATGCTGAAAATCAAGTGGAACTGGAGGAAAAAACAAGACTTA
TTAATCAAGTGTTGGAACTCCAACACACACTTGAAGATCTCTCTGCAAGAGTAGATGCAGTTAAGGAAGA
AAATCTGAAGCTAAAATCAGAAAACCAAGTTCTTGGACAATATATAGAAAATCTCATGTCAGCTTCTAGT
GTTTTTCAAACAACTGACACAAAAAGCAAAAGAAAGTAA

Translation (82 aa):
MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS
VFQTTDTKSKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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