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Report for CCDS54563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54563.1 Public Homo sapiens 3 MLH1 24 110 108 CCDS HistoryNCBI Gene:4292Re-query CCDS DB by CCDS ID:54563.1Re-query CCDS DB by GeneID:4292See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455445.6 ENSP00000398272.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455445.6Link to Ensembl Protein Viewer:ENSP00000398272.2Re-query CCDS DB by Nucleotide ID:ENST00000455445Re-query CCDS DB by Protein ID:ENSP00000398272
Original member Current member EBI ENST00000458205.6 ENSP00000402667.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458205.6Link to Ensembl Protein Viewer:ENSP00000402667.2Re-query CCDS DB by Nucleotide ID:ENST00000458205Re-query CCDS DB by Protein ID:ENSP00000402667
Original member Current member EBI ENST00000539477.6 ENSP00000443665.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539477.6Link to Ensembl Protein Viewer:ENSP00000443665.1Re-query CCDS DB by Nucleotide ID:ENST00000539477Re-query CCDS DB by Protein ID:ENSP00000443665
Original member Current member EBI ENST00000536378.5 ENSP00000444286.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536378.5Link to Ensembl Protein Viewer:ENSP00000444286.2Re-query CCDS DB by Nucleotide ID:ENST00000536378Re-query CCDS DB by Protein ID:ENSP00000444286
Original member Current member EBI ENST00000674019.1 ENSP00000501081.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674019.1Link to Ensembl Protein Viewer:ENSP00000501081.1Re-query CCDS DB by Nucleotide ID:ENST00000674019Re-query CCDS DB by Protein ID:ENSP00000501081
Original member Current member NCBI NM_001167618.3 NP_001161090.1 Accepted alive Link to Nucleotide Sequence:NM_001167618.3Link to Protein Sequence:NP_001161090.1Re-query CCDS DB by Nucleotide ID:NM_001167618Re-query CCDS DB by Protein ID:NP_001161090Link to BLAST:NP_001161090.1
Original member Current member NCBI NM_001167619.3 NP_001161091.1 Accepted alive Link to Nucleotide Sequence:NM_001167619.3Link to Protein Sequence:NP_001161091.1Re-query CCDS DB by Nucleotide ID:NM_001167619Re-query CCDS DB by Protein ID:NP_001161091Link to BLAST:NP_001161091.1
Original member Current member NCBI NM_001258273.2 NP_001245202.1 Accepted alive Link to Nucleotide Sequence:NM_001258273.2Link to Protein Sequence:NP_001245202.1Re-query CCDS DB by Nucleotide ID:NM_001258273Re-query CCDS DB by Protein ID:NP_001245202Link to BLAST:NP_001245202.1
Original member Current member NCBI NM_001258274.3 NP_001245203.1 Accepted alive Link to Nucleotide Sequence:NM_001258274.3Link to Protein Sequence:NP_001245203.1Re-query CCDS DB by Nucleotide ID:NM_001258274Re-query CCDS DB by Protein ID:NP_001245203Link to BLAST:NP_001245203.1
Original member Current member NCBI NM_001354615.2 NP_001341544.1 Accepted alive Link to Nucleotide Sequence:NM_001354615.2Link to Protein Sequence:NP_001341544.1Re-query CCDS DB by Nucleotide ID:NM_001354615Re-query CCDS DB by Protein ID:NP_001341544Link to BLAST:NP_001341544.1
Original member Current member NCBI NM_001354616.2 NP_001341545.1 Accepted alive Link to Nucleotide Sequence:NM_001354616.2Link to Protein Sequence:NP_001341545.1Re-query CCDS DB by Nucleotide ID:NM_001354616Re-query CCDS DB by Protein ID:NP_001341545Link to BLAST:NP_001341545.1
Original member Current member NCBI NM_001354617.2 NP_001341546.1 Accepted alive Link to Nucleotide Sequence:NM_001354617.2Link to Protein Sequence:NP_001341546.1Re-query CCDS DB by Nucleotide ID:NM_001354617Re-query CCDS DB by Protein ID:NP_001341546Link to BLAST:NP_001341546.1
Original member Current member NCBI NM_001354618.2 NP_001341547.1 Accepted alive Link to Nucleotide Sequence:NM_001354618.2Link to Protein Sequence:NP_001341547.1Re-query CCDS DB by Nucleotide ID:NM_001354618Re-query CCDS DB by Protein ID:NP_001341547Link to BLAST:NP_001341547.1
Original member Current member NCBI NM_001354619.2 NP_001341548.1 Accepted alive Link to Nucleotide Sequence:NM_001354619.2Link to Protein Sequence:NP_001341548.1Re-query CCDS DB by Nucleotide ID:NM_001354619Re-query CCDS DB by Protein ID:NP_001341548Link to BLAST:NP_001341548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161090.1 515 P40692-2 515 100% 0 0
NP_001161091.1 515 P40692-2 515 100% 0 0
NP_001245202.1 515 P40692-2 515 100% 0 0
NP_001245203.1 515 P40692-2 515 100% 0 0
NP_001341544.1 515 P40692-2 515 100% 0 0
NP_001341545.1 515 P40692-2 515 100% 0 0
NP_001341546.1 515 P40692-2 515 100% 0 0
NP_001341547.1 515 P40692-2 515 100% 0 0
NP_001341548.1 515 P40692-2 515 100% 0 0

Chromosomal Locations for CCDS 54563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 37014478 37014544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37017506 37017599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37020310 37020463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37025637 37026007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37028784 37028932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37040186 37040294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37042268 37042331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37047519 37047683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37048517 37048609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37048904 37049017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 37050486 37050653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGAATGGTTACATATCCAATGCAAACTACTCAGTGAAGAAGTGCATCTTCTTACTCTTCATCAACCATC
GTCTGGTAGAATCAACTTCCTTGAGAAAAGCCATAGAAACAGTGTATGCAGCCTATTTGCCCAAAAACAC
ACACCCATTCCTGTACCTCAGTTTAGAAATCAGTCCCCAGAATGTGGATGTTAATGTGCACCCCACAAAG
CATGAAGTTCACTTCCTGCACGAGGAGAGCATCCTGGAGCGGGTGCAGCAGCACATCGAGAGCAAGCTCC
TGGGCTCCAATTCCTCCAGGATGTACTTCACCCAGACTTTGCTACCAGGACTTGCTGGCCCCTCTGGGGA
GATGGTTAAATCCACAACAAGTCTGACCTCGTCTTCTACTTCTGGAAGTAGTGATAAGGTCTATGCCCAC
CAGATGGTTCGTACAGATTCCCGGGAACAGAAGCTTGATGCATTTCTGCAGCCTCTGAGCAAACCCCTGT
CCAGTCAGCCCCAGGCCATTGTCACAGAGGATAAGACAGATATTTCTAGTGGCAGGGCTAGGCAGCAAGA
TGAGGAGATGCTTGAACTCCCAGCCCCTGCTGAAGTGGCTGCCAAAAATCAGAGCTTGGAGGGGGATACA
ACAAAGGGGACTTCAGAAATGTCAGAGAAGAGAGGACCTACTTCCAGCAACCCCAGAAAGAGACATCGGG
AAGATTCTGATGTGGAAATGGTGGAAGATGATTCCCGAAAGGAAATGACTGCAGCTTGTACCCCCCGGAG
AAGGATCATTAACCTCACTAGTGTTTTGAGTCTCCAGGAAGAAATTAATGAGCAGGGACATGAGGTTCTC
CGGGAGATGTTGCATAACCACTCCTTCGTGGGCTGTGTGAATCCTCAGTGGGCCTTGGCACAGCATCAAA
CCAAGTTATACCTTCTCAACACCACCAAGCTTAGTGAAGAACTGTTCTACCAGATACTCATTTATGATTT
TGCCAATTTTGGTGTTCTCAGGTTATCGGAGCCAGCACCGCTCTTTGACCTTGCCATGCTTGCCTTAGAT
AGTCCAGAGAGTGGCTGGACAGAGGAAGATGGTCCCAAAGAAGGACTTGCTGAATACATTGTTGAGTTTC
TGAAGAAGAAGGCTGAGATGCTTGCAGACTATTTCTCTTTGGAAATTGATGAGGAAGGGAACCTGATTGG
ATTACCCCTTCTGATTGACAACTATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGACTAGCC
ACTGAGGTGAATTGGGACGAAGAAAAGGAATGTTTTGAAAGCCTCAGTAAAGAATGCGCTATGTTCTATT
CCATCCGGAAGCAGTACATATCTGAGGAGTCGACCCTCTCAGGCCAGCAGAGTGAAGTGCCTGGCTCCAT
TCCAAACTCCTGGAAGTGGACTGTGGAACACATTGTCTATAAAGCCTTGCGCTCACACATTCTGCCTCCT
AAACATTTCACAGAAGATGGAAATATCCTGCAGCTTGCTAACCTGCCTGATCTATACAAAGTCTTTGAGA
GGTGTTAA

Translation (515 aa):
MNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTK
HEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTTSLTSSSTSGSSDKVYAH
QMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDISSGRARQQDEEMLELPAPAEVAAKNQSLEGDT
TKGTSEMSEKRGPTSSNPRKRHREDSDVEMVEDDSRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVL
REMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALD
SPESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRLA
TEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIVYKALRSHILPP
KHFTEDGNILQLANLPDLYKVFERC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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