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Report for CCDS54343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54343.1 Public Homo sapiens 2 SLC30A6 24 110 108 CCDS HistoryNCBI Gene:55676Re-query CCDS DB by CCDS ID:54343.1Re-query CCDS DB by GeneID:55676See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357055.7 ENSP00000349563.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357055.7Link to Ensembl Protein Viewer:ENSP00000349563.4Re-query CCDS DB by Nucleotide ID:ENST00000357055Re-query CCDS DB by Protein ID:ENSP00000349563
Original member Current member NCBI NM_001193515.3 NP_001180444.1 Accepted alive Link to Nucleotide Sequence:NM_001193515.3Link to Protein Sequence:NP_001180444.1Re-query CCDS DB by Nucleotide ID:NM_001193515Re-query CCDS DB by Protein ID:NP_001180444Link to BLAST:NP_001180444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180444.1 432 Q6NXT4-4 432 100% 0 0

Chromosomal Locations for CCDS 54343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32165901 32165903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32174063 32174147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32175319 32175361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32184273 32184338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32192336 32192416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32192918 32192953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32193889 32193983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32197344 32197392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32197707 32197826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32204590 32204692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32206886 32206933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32209493 32209561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32220213 32220713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGTCCTGGAAGATACTGCTCTTTGGTGTAATAAACTTGATATGTACTGGCTTCCTGCTTATGTGGTGCA
GTTCTACTAATAGTATAGCTTTAACTGCCTATACTTACCTGACCATTTTTGATCTTTTTAGTTTAATGAC
ATGTTTAATAAGTTACTGGGTAACATTGAGGAAACCTAGCCCTGTCTATTCATTTGGGTTTGAAAGATTA
GAAGTCCTGGCTGTATTTGCCTCCACAGTCTTGGCACAGTTGGGAGCTCTCTTTATATTAAAAGAAAGTG
CAGAACGCTTTTTGGAACAGCCCGAGATACACACGGGAAGATTATTAGTTGGTACTTTTGTGGCTCTTTG
TTTCAACCTGTTCACGATGCTTTCTATTCGGAATAAACCTTTTGCTTATGTCTCAGAAGCTGCTAGTACG
AGCTGGCTTCAAGAGCATGTTGCAGATCTTAGTCGAAGCTTGTGTGGAATTATTCCGGGACTTAGCAGTA
TCTTCCTTCCCCGAATGAATCCATTTGTTTTGATTGATCTTGCTGGAGCATTTGCTCTTTGTATTACATA
TATGCTCATTGAAATTAATAATTATTTTGCCGTAGACACTGCCTCTGCTATAGCTATTGCCTTGATGACA
TTTGGCACTATGTATCCCATGAGTGTGTACAGTGGGAAAGTCTTACTCCAGACAACACCACCCCATGTTA
TTGGTCAGTTGGACAAACTCATCAGAGAGGTATCTACCTTAGATGGAGTTTTAGAAGTCCGAAATGAACA
TTTTTGGACCCTAGGTTTTGGCTCATTGGCTGGATCAGTGCATGTAAGAATTCGACGAGATGCCAATGAA
CAAATGGTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAGTGTCTACTCTAACTGTTCAAATTTTCA
AGGATGACTGGATTAGGCCTGCCTTATTGTCTGGGCCTGTTGCAGCCAATGTCCTAAACTTTTCAGATCA
TCACGTAATCCCAATGCCTCTTTTAAAGGGTACTGATGATTTGAACCCAGTTACATCAACTCCAGCTAAA
CCTAGTAGTCCACCTCCAGAATTTTCATTTAACACTCCTGGGAAAAATGTGAACCCAGTTATTCTTCTAA
ACACACAAACAAGGCCTTATGGTTTTGGTCTCAATCATGGACACACACCTTACAGCAGCATGCTTAATCA
AGGACTTGGAGTTCCAGGAATTGGAGCAACTCAAGGATTGAGGACTGGTTTTACAAATATACCAAGTAGA
TATGGAACTAATAATAGAATTGGACAACCAAGACCATGA

Translation (432 aa):
MSWKILLFGVINLICTGFLLMWCSSTNSIALTAYTYLTIFDLFSLMTCLISYWVTLRKPSPVYSFGFERL
EVLAVFASTVLAQLGALFILKESAERFLEQPEIHTGRLLVGTFVALCFNLFTMLSIRNKPFAYVSEAAST
SWLQEHVADLSRSLCGIIPGLSSIFLPRMNPFVLIDLAGAFALCITYMLIEINNYFAVDTASAIAIALMT
FGTMYPMSVYSGKVLLQTTPPHVIGQLDKLIREVSTLDGVLEVRNEHFWTLGFGSLAGSVHVRIRRDANE
QMVLAHVTNRLYTLVSTLTVQIFKDDWIRPALLSGPVAANVLNFSDHHVIPMPLLKGTDDLNPVTSTPAK
PSSPPPEFSFNTPGKNVNPVILLNTQTRPYGFGLNHGHTPYSSMLNQGLGVPGIGATQGLRTGFTNIPSR
YGTNNRIGQPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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