NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54256.1 Public Homo sapiens 19 ZNF529 24 110 108 CCDS HistoryNCBI Gene:57711Re-query CCDS DB by CCDS ID:54256.1Re-query CCDS DB by GeneID:57711See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000591340.6 ENSP00000465578.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000591340.6Link to Ensembl Protein Viewer:ENSP00000465578.1Re-query CCDS DB by Nucleotide ID:ENST00000591340Re-query CCDS DB by Protein ID:ENSP00000465578
Original member Current member NCBI NM_001145649.2 NP_001139121.1 Accepted alive Link to Nucleotide Sequence:NM_001145649.2Link to Protein Sequence:NP_001139121.1Re-query CCDS DB by Nucleotide ID:NM_001145649Re-query CCDS DB by Protein ID:NP_001139121Link to BLAST:NP_001139121.1
Original member Current member NCBI NM_020951.5 NP_066002.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020951.5Link to Protein Sequence:NP_066002.3Re-query CCDS DB by Nucleotide ID:NM_020951Re-query CCDS DB by Protein ID:NP_066002Link to BLAST:NP_066002.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139121.1 563 Q6P280 563 100% 0 0
NP_066002.3 563 Q6P280 563 100% 0 0

Chromosomal Locations for CCDS 54256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36546866 36548322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36554670 36554796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36556104 36556197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36572333 36572346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCCAACTCAAGTTTCATTGGGGATCATGTCCATGGAGCTCCTCATGCTGTCATGCCAGAAGTGGAAT
TCCCTGACCAATTCTTTACAGTTCTAACCATGGACCATGAACTGGTGACACTCAGGGATGTGGTCATCAA
CTTCTCTCAGGAGGAATGGGAATATCTGGATTCTGCTCAGAGGAACTTGTACTGGGATGTGATGATGGAG
AACTACAGCAACTTACTCTCACTGGATTTGGAGTCCAGGAATGAGACTAAGCATTTATCTGTAGGAAAAG
ATATTATTCAAAACACTGGTTCTCAGTGGGAGGTAATGGAAAGTAGCAAGTTATGTGGCCTTGAAGGTTC
CATTTTCAGAAATGACTGGCAAAGCAAAAGCAAGATTGACTTACAAGGACCTGAAGTGGGATATTTCAGT
CAAATGAAAATCATCTCTGAAAATGTGCCCAGTTACAAAACTCATGAATCTCTTACTTTACCTCGGAGAA
CTCATGACAGTGAGAAGCCCTATGAATACAAGGAATATGAGAAGGTCTTCAGTTGTGACTTAGAGTTTGA
TGAATATCAGAAAATACATACTGGTGGAAAAAACTATGAATGTAATCAATGTTGGAAAACCTTTGGGATA
GATAACTCCAGTATGTTACAACTGAATATTCATACTGGTGTGAAACCTTGTAAATATATGGAATATGGGA
ATACATGTAGTTTTTATAAAGACTTTAATGTATACCAGAAAATTCATAATGAGAAGTTCTATAAATGTAA
GGAATACAGAAGGACCTTTGAAAGAGTTGGAAAAGTTACTCCACTTCAAAGAGTTCATGATGGTGAGAAA
CACTTTGAATGCTCATTCTGTGGGAAATCCTTTAGAGTGCATGCACAACTTACTCGACATCAGAAAATCC
ATACTGATGAGAAAACTTACAAATGTATGGAATGTGGCAAGGACTTCAGATTTCATTCACAGCTTACCGA
ACATCAGAGAATTCATACTGGTGAGAAACCCTACAAATGTATGCACTGTGAGAAGGTTTTTAGAATTAGT
TCACAGCTCATTGAACATCAGAGAATTCACACTGGTGAGAAACCTTATGCATGTAAGGAATGTGGGAAGG
CTTTTGGAGTATGTAGAGAACTTGCTCGTCATCAGAGAATTCATACTGGTAAGAAACCCTATGAATGCAA
AGCATGTGGAAAGGTCTTTAGAAATAGTTCATCCCTGACTAGACATCAGAGGATTCATACTGGTGAAAAA
CCCTATAAATGTAAAGAATGTGAGAAAGCATTTGGAGTAGGTAGTGAACTTACTCGACATGAAAGAATTC
ACAGTGGTCAAAAACCTTATGAATGTAAGGAGTGTGGAAAGTTCTTTAGACTTACGTCAGCCCTTATTCA
ACATCAAAGAATTCATAGTGGTGAGAAACCTTATGAATGTAAGGTATGTGGGAAGGCCTTTAGACATAGT
TCAGCCCTTACAGAACATCAGAGAATTCATACTGGAGAAAAACCCTATGAATGCAAGGCATGTGGGAAGG
CCTTTAGACATAGTTCATCCTTTACCAAACATCAGCGCATTCATACTGATGATAAACCCTATGAATGTAA
GGAGTGTGGGAATTCCTTTAGTGTTGTTGGGCATCTTACTTGCCAACCGAAAATTTACACTGGTGAGAAA
TCATTTGACTGA

Translation (563 aa):
MANSSFIGDHVHGAPHAVMPEVEFPDQFFTVLTMDHELVTLRDVVINFSQEEWEYLDSAQRNLYWDVMME
NYSNLLSLDLESRNETKHLSVGKDIIQNTGSQWEVMESSKLCGLEGSIFRNDWQSKSKIDLQGPEVGYFS
QMKIISENVPSYKTHESLTLPRRTHDSEKPYEYKEYEKVFSCDLEFDEYQKIHTGGKNYECNQCWKTFGI
DNSSMLQLNIHTGVKPCKYMEYGNTCSFYKDFNVYQKIHNEKFYKCKEYRRTFERVGKVTPLQRVHDGEK
HFECSFCGKSFRVHAQLTRHQKIHTDEKTYKCMECGKDFRFHSQLTEHQRIHTGEKPYKCMHCEKVFRIS
SQLIEHQRIHTGEKPYACKECGKAFGVCRELARHQRIHTGKKPYECKACGKVFRNSSSLTRHQRIHTGEK
PYKCKECEKAFGVGSELTRHERIHSGQKPYECKECGKFFRLTSALIQHQRIHSGEKPYECKVCGKAFRHS
SALTEHQRIHTGEKPYECKACGKAFRHSSSFTKHQRIHTDDKPYECKECGNSFSVVGHLTCQPKIYTGEK
SFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH