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Report for CCDS54235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54235.1 Public Homo sapiens 19 BORCS8 24 110 108 CCDS HistoryNCBI Gene:729991Re-query CCDS DB by CCDS ID:54235.1Re-query CCDS DB by GeneID:729991See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54235.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000477565.3 ENSP00000424833.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000477565.3Link to Ensembl Protein Viewer:ENSP00000424833.1Re-query CCDS DB by Nucleotide ID:ENST00000477565Re-query CCDS DB by Protein ID:ENSP00000424833
Original member Current member NCBI NM_001145783.2 NP_001139255.1 Accepted alive Link to Nucleotide Sequence:NM_001145783.2Link to Protein Sequence:NP_001139255.1Re-query CCDS DB by Nucleotide ID:NM_001145783Re-query CCDS DB by Protein ID:NP_001139255Link to BLAST:NP_001139255.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139255.1 109 Q96FH0-2 109 100% 0 0

Chromosomal Locations for CCDS 54235.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19182569 19182683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19186034 19186098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19186893 19187005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19192081 19192117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGAGGAGCCGGAGATGCAGCTCAAGGGGAAGAAAGTCACGGACAAGTTCACTGAGAGCGTCTACGTCC
TGGCCAACGAGCCATCCGTGGCCCTGTACCGGCTGCAGGAGCATGTGCGTCGCTCCCTCCCCGAGCTGGC
CCAGCACAAGGCAGACATGCAGCGTTGGGAGGAGCAGAGCCAGGGAGCCATCTACACTGTGGAGTACGCC
TGCAGCGCCGTGAAGAACCTGGTGGACAGCAGCGTCTACTTCCGCAGCGTGGAGGGTCTGCTCAAACAGG
CCATCAGCATCCGGGACCATATGAATGCCAGTGCCCAGGGCCACAGGTAG

Translation (109 aa):
MEEPEMQLKGKKVTDKFTESVYVLANEPSVALYRLQEHVRRSLPELAQHKADMQRWEEQSQGAIYTVEYA
CSAVKNLVDSSVYFRSVEGLLKQAISIRDHMNASAQGHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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