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Report for CCDS54118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54118.1 Public Homo sapiens 17 STARD3 24 110 108 CCDS HistoryNCBI Gene:10948Re-query CCDS DB by CCDS ID:54118.1Re-query CCDS DB by GeneID:10948See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54118.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394250.8 ENSP00000377794.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394250.8Link to Ensembl Protein Viewer:ENSP00000377794.4Re-query CCDS DB by Nucleotide ID:ENST00000394250Re-query CCDS DB by Protein ID:ENSP00000377794
Original member Current member NCBI NM_001165938.2 NP_001159410.1 Accepted alive Link to Nucleotide Sequence:NM_001165938.2Link to Protein Sequence:NP_001159410.1Re-query CCDS DB by Nucleotide ID:NM_001165938Re-query CCDS DB by Protein ID:NP_001159410Link to BLAST:NP_001159410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159410.1 427 Q14849-2 427 100% 0 0

Chromosomal Locations for CCDS 54118.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39653532 39653750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39657008 39657085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39657775 39657852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39658405 39658522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39658722 39658820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39659051 39659106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39659461 39659553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660211 39660273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660431 39660526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660810 39660889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660981 39661085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39662251 39662344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39662804 39662908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGAGCAAGCTGCCCAGGGAGCTGACCCGAGACTTGGAGCGCAGCCTGCCTGCCGTGGCCTCCCTGGGCT
CCTCACTGTCCCACAGCCAGAGCCTCTCCTCGCACCTCCTTCCGCCGCCTGAGAAGCGAAGGGCCATCTC
TGATGTCCGCCGCACCTTCTGTCTCTTCGTCACCTTCGACCTGCTCTTCATCTCCCTGCTCTGGATCATC
GAACTGAATACCAACACAGGCATCCGTAAGAACTTGGAGCAGGAGATCATCCAGTACAACTTTAAAACTT
CCTTCTTCGACATCTTTGTCCTGGCCTTCTTCCGCTTCTCTGGACTGCTCCTAGGCTATGCCGTGCTGCG
GCTCCGGCACTGGTGGGTGATTGCGCTGCTCAGCAAAGGGGCATTTGGCTACCTGCTCCCCATCGTCTCT
TTTGTCCTCGCCTGGTTGGAGACCTGGTTCCTTGACTTCAAAGTCCTACCCCAGGAAGCTGAAGAGGAGC
GATGGTATCTTGCCGCCCAGGTTGCTGTTGCCCGTGGACCCCTGCTGTTCTCCGGTGCTCTGTCCGAGGG
ACAGTTCTATTCACCCCCAGAATCCTTTGCAGGGTCTGACAATGAATCAGATGAAGAAGTTGCTGGGAAG
AAAAGTTTCTCTGCTCAGGAGCGGGAGTACATCCGCCAGGGGAAGGAGGCCACGGCAGTGGTGGACCAGA
TCTTGGCCCAGGAAGAGAACTGGAAGTTTGAGAAGAATAATGAATATGGGGACACCGTGTACACCATTGA
AGTTCCCTTTCACGGCAAGACGTTTATCCTGAAGACCTTCCTGCCCTGTCCTGCGGAGCTCGTGTACCAG
GAGGTGATCCTGCAGCCCGAGAGGATGGTGCTGTGGAACAAGACAGTGACTGCCTGCCAGATCCTGCAGC
GAGTGGAAGACAACACCCTCATCTCCTATGACGTGTCTGCAGGGGCTGCGGGCGGCGTGGTCTCCCCAAG
GGACTTCGTGAATGTCCGGCGCATTGAGCGGCGCAGGGACCGATACTTGTCATCAGGGATCGCCACCTCA
CACAGTGCCAAGCCCCCGACGCACAAATATGTCCGGGGAGAGAATGGCCCTGGGGGCTTCATCGTGCTCA
AGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCTGGATTCTTAATACAGATCTCAAGGGCCGCCTGCC
CCGGTACCTCATCCACCAGAGCCTCGCGGCCACCATGTTTGAATTTGCCTTTCACCTGCGACAGCGCATC
AGCGAGCTGGGGGCCCGGGCGTGA

Translation (427 aa):
MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFDLLFISLLWII
ELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLRLRHWWVIALLSKGAFGYLLPIVS
FVLAWLETWFLDFKVLPQEAEEERWYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGK
KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQ
EVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATS
HSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRI
SELGARA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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