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Report for CCDS54088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54088.1 Public Homo sapiens 17 CCDC42 24 110 108 CCDS HistoryNCBI Gene:146849Re-query CCDS DB by CCDS ID:54088.1Re-query CCDS DB by GeneID:146849See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539522.2 ENSP00000444359.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539522.2Link to Ensembl Protein Viewer:ENSP00000444359.2Re-query CCDS DB by Nucleotide ID:ENST00000539522Re-query CCDS DB by Protein ID:ENSP00000444359
Original member Current member NCBI NM_001158261.2 NP_001151733.1 Accepted alive Link to Nucleotide Sequence:NM_001158261.2Link to Protein Sequence:NP_001151733.1Re-query CCDS DB by Nucleotide ID:NM_001158261Re-query CCDS DB by Protein ID:NP_001151733Link to BLAST:NP_001151733.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001151733.1 242 Q96M95-2 242 100% 0 0

Chromosomal Locations for CCDS 54088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8730130 8730207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8735096 8735254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8741474 8741671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8743626 8743730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8744079 8744184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8744527 8744609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGAGTCTGGGCATCATGGAAGAGGAAGACCTGGCCGAGTACTTCCGGCTGCAGTATGGGGAGCGGCTGC
TGCAGATGCTCCAGAAACTCCCCAATGTTGAGGGGGCGTCGGAGTCCCCATCCATCTGGCTACTGGAGAA
GAAAAAGGAGACAGAAATCATGCATCAAACTATGGTGCAGAAGAAGAAGATGTTTCAGCGCAGAATGGAA
ACCCTGAACCTGCGCTGGGAGGAACTGGGCGTTAAGGAAGCCCAACTGAAGGCTCACATCCAGAAGTCTG
AGCAGTTCATCCAGGAGAACGACCAGAAACGGATCCGCGCCATGAAGAAAGCCAACAAGGAGCGAGAACT
CAAGTGCCAGCACATGCAGGAGCTGACCAAGCGCAAGCAGGAGATGGTGGCGCTGCGGCTGGAGCACCAG
CGGCTGAGCGCCAAGCTGAAGGACTACTACATCTTCAACAAGTACCTAGAGAAGGTGGTGGAGAACTCCG
AGGAATCTCGCTGGGCGCACATCCAGAACACCGCAGCCAAGAAGACCCTCCTGCTTGGCACCATTAAGAT
GGCCACGCTGAACCTCTTCCAGATCGTGAGCAAGCACCTGAAGGAGGTGACTGAGGTGGCACTGGAGGAC
ACCCACAAGCAGCTGGACATGATCCAGCAATTTATCCAAGACCGGTCGGACATCTGGGCAGAGGTGAAAA
AGAAGGAACAACAGCGAGTCCGGATTTAA

Translation (242 aa):
MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQKKKMFQRRME
TLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQHMQELTKRKQEMVALRLEHQ
RLSAKLKDYYIFNKYLEKVVENSEESRWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKHLKEVTEVALED
THKQLDMIQQFIQDRSDIWAEVKKKEQQRVRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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