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Report for CCDS53898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53898.1 Public Homo sapiens 14 CCDC175 24 110 108 CCDS HistoryNCBI Gene:729665Re-query CCDS DB by CCDS ID:53898.1Re-query CCDS DB by GeneID:729665See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53898.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537690.7 ENSP00000453940.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537690.7Link to Ensembl Protein Viewer:ENSP00000453940.1Re-query CCDS DB by Nucleotide ID:ENST00000537690Re-query CCDS DB by Protein ID:ENSP00000453940
Original member Current member NCBI NM_001164399.2 NP_001157871.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164399.2Link to Protein Sequence:NP_001157871.1Re-query CCDS DB by Nucleotide ID:NM_001164399Re-query CCDS DB by Protein ID:NP_001157871Link to BLAST:NP_001157871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157871.1 793 P0C221 793 100% 0 0

Chromosomal Locations for CCDS 53898.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59505239 59505315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59510646 59510808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59511760 59511803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59521574 59521676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59525282 59525434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59527095 59527174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59531772 59531910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59538023 59538154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59538705 59538840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59540675 59540746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59543344 59543454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59545163 59545299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59551355 59551436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59561119 59561228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59563737 59563859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59565047 59565275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59568245 59568380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59572702 59572813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59574943 59575028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59576619 59576775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGCCCTGAGCCCCTGGACCCCAGGGCTGGGCGCTGGCGAGAAGCTGGTGCAGGCGGCTGCCGTCTCCA
CTGGCCCCTCCCTGGAGTTATGCACCTTACCCTCCACCCTGGGCTCCTCGGTCGCGGTCGAGGCGCTGGA
GCAGCTGTTTGTTGTGGAACAATCACTGCAAAGTGACTATTTTAAATGTAATGAAGAAGCTAAGATCTTT
CTTAAGGACATTGCTGTAGCTGTTAAGAAATTGGAAGAAATGAGAAAAGCCACAATCGATCTTTTGGAGA
TTGAAAGCATGGAACTCAACAAACTATACTATCTATTGGAAACTCTTCCCAATAGCATTAAGAGGGAATT
GGAAGAATGTGTCCGAGACGCTCGCAGATTAAATCTTTTTGAGATAAATACAATAAAAATGAGAATTACA
AGGACAGAGAATGAAATAGAGCTTCTGAAGAAGAAAATAACTGACCTGACAAAATATAATGAAGCTCTGG
GGGAGAAGCAGGAAGAGCTAGCAAGGAAGCATGCAAGGTTTGTCCTGTCACTCAACCAAACTATGGAGAA
AAAAGCCACCACCACTGTTTACATAAATGAGACTTATACCAAAATAAACTTGAAGAGAGAAGACATAGCA
TTGCAAAAAAAATGTATTCAAGAGGCAGAGGAGCTAATGGAAAAAGAAAGGGCAGAATATCTAATAAGAA
AACAAGAGTTGACTGCACAGATTAATGAATTTGAAAATACCCGTGAAGTAAAGAGAATGGAGACTTATCA
AAAGAAGAAAGAATTGGATAAATTACAAACTAAAATGTCAAAAATAAAAGAAACAGTTACTGTTTCCGCA
GCGGTTCTTAGTGATCACAATTTAGAGATAGCACGACTACACGAATCAATAAGGTATTGGGAACAAGAGG
TCAGTGAGCTAAAGAAAGACCTTGCAATTCTGGAGGCGAAACTGTGTTTTTTCACAGATAACAAAGAAAA
ACTAGATGATATATCTAATGATGAAAAAAATGAATTCCTGAACAAGATAAAACAGCTGGTTGAAACACTG
CATGCTGCTCGTATGGAATACAAAGACCTACGAGAGAAAATGAAAACTCTTGCCAGACAATATAAGATTG
TTTTAAGTGAGGAAGAAAAAGCTTTTTTGCAAAAACAAAAGATTCATGATGAAAATCAGAAACAGCTGAC
ATTTATTTCTCAGAAAGAATACTTTCTGTCACAAAAGAGAGTAGACATCAAAAATATGGAAGAAGGACTC
ATCACACTCCAGGAACTTCAACAAGCAACAAAAACAGTGTATCAGCAACAAATCAAAATCCTGAGTGCTA
ACCTGGAAAGAGAAAGTCAGAGATGTGTTATAACTCAGTGGAAAATGGCTTGCTTGAGAAAAAAGCATGC
ACGTTGGACAGCCAAGATAAAAGCTGAAATACAAGCTATTACAGAAAAAATTCAGAATGCAGAAGTTAGA
CGAATTGAATTACTTAACGAGACCAGTTTCAGACAACAGGAGATCAGTGGATTTGTGGCACAGATTGAAA
AACTTACAACAGAATTAAAAGAAGAGGAGAAAGCATTTGTTAACAAAGAAAAAATGTTAATGAAAGAGTT
AAGCAAGTATGAGGAAATATTTGTTAAGGAAACACAAATTAACAAAGAAAAGGAAGAAGAACTAGTTGAG
TATCTTCCACAACTTCAGGTGGCAGAACAAGAGTATAAAGAGAAAAGAAGAAAGTTAGAAGAGCTCAGTA
ATATTATTACAGCACAAAGACAGGAGGAAGATTTACTGAACAATCACATTTTTCTGTTTACAAGGGACTT
TTCAAGATACATTAGCAACATGGAAGATGTAAAACAAGAATTACAACAATTACGAGATCAAGAAAGCAAA
AAAAACAAAGATCATTTTGAAACTCTAAAGAACTTAGAAAATGGATTCTATATAAATGACCAAAAAGCAG
ATCTTCTGCTCCTGGAAAATAAAAAATTAAAAGAATATATTTTATACTTGAAGAATAACATAGAGAAATA
CAGAGAAGGACAAGAAGCCCTCATGCACACCTCAAGCGACTTGTCTCGGCAACTAATAGCTCAGGAGGCA
CAATATAAGGATTTGTGGGCTGAATTTCAGACCACAGTTAAGATCTTGGTGGACAATGGTGAAGAGACCT
TGCAAGACATAAACAATCTAACAGACAAGCTGCGTGAAAGAGATGAAAAAATGCAGCATGTCAGTACATG
GCTACGAGGGAGTCTTGAAGGGCTGCGTTTGCTTGTGGAACAGGAATCACCAATGGACCTTCTTAAGAAG
AAGAAACACATTCGTACAAGGGTTCATTTCCCAGTGGTTAAATGTACTGAGAAAAATACATTAACAAAGT
AA

Translation (793 aa):
MALSPWTPGLGAGEKLVQAAAVSTGPSLELCTLPSTLGSSVAVEALEQLFVVEQSLQSDYFKCNEEAKIF
LKDIAVAVKKLEEMRKATIDLLEIESMELNKLYYLLETLPNSIKRELEECVRDARRLNLFEINTIKMRIT
RTENEIELLKKKITDLTKYNEALGEKQEELARKHARFVLSLNQTMEKKATTTVYINETYTKINLKREDIA
LQKKCIQEAEELMEKERAEYLIRKQELTAQINEFENTREVKRMETYQKKKELDKLQTKMSKIKETVTVSA
AVLSDHNLEIARLHESIRYWEQEVSELKKDLAILEAKLCFFTDNKEKLDDISNDEKNEFLNKIKQLVETL
HAARMEYKDLREKMKTLARQYKIVLSEEEKAFLQKQKIHDENQKQLTFISQKEYFLSQKRVDIKNMEEGL
ITLQELQQATKTVYQQQIKILSANLERESQRCVITQWKMACLRKKHARWTAKIKAEIQAITEKIQNAEVR
RIELLNETSFRQQEISGFVAQIEKLTTELKEEEKAFVNKEKMLMKELSKYEEIFVKETQINKEKEEELVE
YLPQLQVAEQEYKEKRRKLEELSNIITAQRQEEDLLNNHIFLFTRDFSRYISNMEDVKQELQQLRDQESK
KNKDHFETLKNLENGFYINDQKADLLLLENKKLKEYILYLKNNIEKYREGQEALMHTSSDLSRQLIAQEA
QYKDLWAEFQTTVKILVDNGEETLQDINNLTDKLRERDEKMQHVSTWLRGSLEGLRLLVEQESPMDLLKK
KKHIRTRVHFPVVKCTEKNTLTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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