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Report for CCDS53667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53667.1 Public Homo sapiens 11 CARNS1 24 110 108 CCDS HistoryNCBI Gene:57571Re-query CCDS DB by CCDS ID:53667.1Re-query CCDS DB by GeneID:57571See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53667.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445895.2 ENSP00000389009.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445895.2Link to Ensembl Protein Viewer:ENSP00000389009.2Re-query CCDS DB by Nucleotide ID:ENST00000445895Re-query CCDS DB by Protein ID:ENSP00000389009
Original member Current member EBI ENST00000687366.1 ENSP00000510668.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000687366.1Link to Ensembl Protein Viewer:ENSP00000510668.1Re-query CCDS DB by Nucleotide ID:ENST00000687366Re-query CCDS DB by Protein ID:ENSP00000510668
Original member Current member NCBI NM_001166222.2 NP_001159694.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166222.2Link to Protein Sequence:NP_001159694.1Re-query CCDS DB by Nucleotide ID:NM_001166222Re-query CCDS DB by Protein ID:NP_001159694Link to BLAST:NP_001159694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159694.1 950 A5YM72-5 950 100% 0 0

Chromosomal Locations for CCDS 53667.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67416200 67416202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67417407 67417677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67418431 67418520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67418756 67419243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67419487 67419661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67419753 67419838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67420609 67420840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67420939 67421219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67423375 67424601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGCTCTCCCTGGATCCATCGGGTCCCGAGTGGGATTGCCCACTGGGCTCCAAGGACCTGGAGGAAGAGG
GCCCCTGGGGAGGGGGCTCTGGCCTGCCGCCCACAGGCTGCTTCCCTGGCTCCTGGCGCCAGGACGTGGG
CCTGGACTGCAAGGGATCCCCCGAGGGGGCCGAGGCCCGGGCTTGGACTGTCTACTACTACAGCCTCCTG
CAGAGCTGTCTGCAGCAAGCTGGCCTTCCGGAGACTCAGGACCGCGGCCAGGTGCCCCGCACAGGCTGTC
CTGGGGCGGAGGTGACCTTGTGCGTTCTGGGCTCCCCCAGCACCTTTCTGCCTGTGCTGCTGGAGGGTGG
GGTCCAGAGCCCGGGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGCCAGCACCCGGG
CAGCCGGGTGAGGCAGCCCTGCTAGTCTCCAAGGCTGTGAGCTTCCACCCTGGGGGCCTGACATTCCTGG
ATGACTTTGTCCCCCCGCGCCGTGCCACCTACTTTTTGGCAGGCCTGGGCCTGGGGCCTGGCCGGGGCCG
AGAGGCAGCAGAACTCGCCCGTGACCTGACCTGCCCCACAGGAGCTTCGGCTGAGCTGGCCCGGCTGCTG
GAGGACCGGCTGCTGACAAGGCAGTTGCTGGCCCAGCAGGGTGGTGTGGCTGTGCCAGCAACCCTGGCTT
TCACCTACAAGCCGCCGGGGCTGCTGCGGGGAGGGGATGCCAGCCTAGGGCTACGGCTGGTGGAGCTGAG
TGGCAAAGAGGGCCAGGAGACGCTGGTGAAAGAGGAAGTGGAGGCTTTTCTGCGCTCCGAGGCCCTGGGT
GATATCCTGCAGGTAGCTGTGAAGCTCAGTGGCTGGCGCTGGCGGGGGCGGCAGGCATGGCGTCTGCACC
CGCGGGCAGAGCTGGGTGCAGTGGTGGACACAGTGCTGGCGCTGCTGGAGAAGCTGGAGGAGGAGGAGAG
TGTCCTGGTGGAGGCTGTGTACCCACCTGCCCAGCTGCCCTGCTCAGATGGTCCTTCACCCGGCCCCGGC
CTGGCCGTGCGAATCTGTGCTGTGGTGTGTCGGACACAGGGTGATAGGCCACTGCTGAGCAAGGTGGTGT
GCGGCGTGGGCCGCGGGGACCGCCCTCTACGGCACCACAACTCCCTGCCGAGGACGCTGGAGGTGGCGCT
GGCCCAGTGCGGCCTGGGCGAGGAGGCGCAGGTGGCGGCTGTGCGGCAGCGCGTCAAGGCGGCGGCCGAG
GCCGCGCTGGCCGCCGTGCTGGCTCTGGAGGCCGGCCTGAGTGCCGAGCAGCGCGGCGGGCGCCGGGCGC
ACACGGACTTCCTGGGCGTGGATTTCGCGCTGACAGCGGCCGGCGGCGTGCTGACCCCAGTGGCCCTGGA
GCTGAACGGCGGCCTGTGTCTGGAGGCGTGCGGCGCGCTGGAGGGGCTGTGGGCCGCGCCGCGGCTGGGG
CCGGCGGCCGACGAGGCGGTGGCGGCGCCGCTGGTGGAGACCATGCTTCGGCGGTCGGCGCGCTGCCTCA
TGGAGGGAAAACAGCTGCTGGTGGTCGGCGCTGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCG
CGACTACGGGCTCCAGCTGCACCTCGTGGAGTCAGACCCCAACCACTTTGCATCCCAGTTGGTACAGACC
TTCATCCACTTTGACATGACAGAGCACCGGAGGGATGAGGAGAACGCACGGCTGCTGGCAGAGTTGGTGC
GGGCTCGCGGCCTCAAGCTAGATGGCTGCTTCTCCTACTGGGATGACTGCCTGGTGCTCACAGCCCTGCT
CTGCCAGGAGCTAGGTCTGCCCTGCAGCTCCCCAGCTGCCATGCGCCTGGCTAAGCAGAAGAGCCTCACC
CAGCTGCACCTGTTGCACCACCATGGCCCACCCTGGCCTGCGCCCTCCCTCCATGCTGTGCCCTGCTGCC
CACTGGAGAGTGAGGCTGATGTGGAGAGGGCCGTGCACCAGGTACCCCTGCCAGGTGTCATGAAGCTGGA
GTTCGGGGCAGGTGCAGTGGGTGTCCGGCTGGTAGAGGATGCGCCACAGTGCCATGAGCACTTTTCCCGG
ATTACCCGAGACTTGCAGGGCGAGGCCGACCACCCAGGCATTGGGCTGGGCTGGGGCAATGCCATGCTGC
TGATGGAGTTTGTGGAGGGCACCGAGCACGACGTGGACCTGGTGTTGTTTGGTGGGCGGTTGCTGGCTGC
CTTTGTCTCCGACAATGGCCCTACGAGGCTGCCTGGCTTCACTGAGACGGCGGCCTGCATGCCCACCGGG
CTGGCACCAGAGCAGGAGGCACAGATGGTTCAGGCAGCCTTCCGCTGTTGCCTGGGCTGCGGGTTGCTCG
ATGGAGTCTTCAACGTGGAGCTCAAGCTGACCGGGGCTGGGCCTCGGCTTATCGAGATCAACCCCCGCAT
GGGTGGCTTCTACCTGCGTGATTGGATCCTGGAGCTCTATGGTGTTGACCTGCTGCTGGCTGCTGTTATG
GTGGCCTGTGGCTTGCGTCCTGCCCTGCCCACCCGCCCACGTGCTCGTGGCCATCTGGTGGGCGTCATGT
GCCTTGTGTCCCAGCACCTGCAGGCCCTGAGTTCCACCGCCAGCCGTGAGACCCTGCAGGCCCTGCACGA
CCGTGGACTGCTACGCCTCAATCTGCTGGAGGAGGCCCTGGTGCCTGGCGAGTATGAGGAGCCCTACTGC
AGTGTGGCCTGTGCCGGACCCAGCCCCACCGAGGCCCGTCTCCGCCTGCTGGGCCTCTGCCAGGGCCTGG
GCATCGATGGGCCCAGCTACCCTGTTGCCCACTTCCTGTCTCACTTCAAATAG

Translation (950 aa):
MLSLDPSGPEWDCPLGSKDLEEEGPWGGGSGLPPTGCFPGSWRQDVGLDCKGSPEGAEARAWTVYYYSLL
QSCLQQAGLPETQDRGQVPRTGCPGAEVTLCVLGSPSTFLPVLLEGGVQSPGNMLLCLSPAWLMKVPAPG
QPGEAALLVSKAVSFHPGGLTFLDDFVPPRRATYFLAGLGLGPGRGREAAELARDLTCPTGASAELARLL
EDRLLTRQLLAQQGGVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAFLRSEALG
DILQVAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAVYPPAQLPCSDGPSPGPG
LAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTLEVALAQCGLGEEAQVAAVRQRVKAAAE
AALAAVLALEAGLSAEQRGGRRAHTDFLGVDFALTAAGGVLTPVALELNGGLCLEACGALEGLWAAPRLG
PAADEAVAAPLVETMLRRSARCLMEGKQLLVVGAGGVSKKFVWEAARDYGLQLHLVESDPNHFASQLVQT
FIHFDMTEHRRDEENARLLAELVRARGLKLDGCFSYWDDCLVLTALLCQELGLPCSSPAAMRLAKQKSLT
QLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAVGVRLVEDAPQCHEHFSR
ITRDLQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNGPTRLPGFTETAACMPTG
LAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRDWILELYGVDLLLAAVM
VACGLRPALPTRPRARGHLVGVMCLVSQHLQALSSTASRETLQALHDRGLLRLNLLEEALVPGEYEEPYC
SVACAGPSPTEARLRLLGLCQGLGIDGPSYPVAHFLSHFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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