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Report for CCDS53311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53311.1 Public Homo sapiens 1 ARMH1 24 110 108 CCDS HistoryNCBI Gene:339541Re-query CCDS DB by CCDS ID:53311.1Re-query CCDS DB by GeneID:339541See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458657.6 ENSP00000420716.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458657.6Link to Ensembl Protein Viewer:ENSP00000420716.1Re-query CCDS DB by Nucleotide ID:ENST00000458657Re-query CCDS DB by Protein ID:ENSP00000420716
Original member Current member EBI ENST00000535358.6 ENSP00000440524.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535358.6Link to Ensembl Protein Viewer:ENSP00000440524.1Re-query CCDS DB by Nucleotide ID:ENST00000535358Re-query CCDS DB by Protein ID:ENSP00000440524
Original member Current member NCBI NM_001145636.2 NP_001139108.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145636.2Link to Protein Sequence:NP_001139108.1Re-query CCDS DB by Nucleotide ID:NM_001145636Re-query CCDS DB by Protein ID:NP_001139108Link to BLAST:NP_001139108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139108.1 440 Q6PIY5-1 440 100% 0 0

Chromosomal Locations for CCDS 53311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44689698 44689903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44697102 44697170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44698063 44698229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44700923 44701119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44704089 44704173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44724122 44724244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44724320 44724392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44724539 44724668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44724762 44724839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44725136 44725217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44725291 44725403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGACTTCTATAAAGGAGCAGGCAGCAATTAGCAGGCTCTTAAGTTTTTTACAGGAGTGGGACAACGCTG
GCAAAGTCGCAAGGAGTCACATCCTCGACAAGTTCATTGAAACCAACCAAGGCAAGACTGCCCCTGAACT
GGAGCAGGAGTTTTCCCAGGGAGCCAGTTTGTTCCTGGTACGCTTGACCACCTCGCTTAGAATCACCTAT
ATGACTGACTCATGTTTAGAAAAGCTTCTCAGGTCCATTGGCATCTTCTTATCAGCTGTAAGCAGTAATC
GGTACCTTATAGAATTTCTTGAGGTTGGAGGTGTCCTAACCCTCTTGGAAATACTTGGGCTAGAGAAGAT
CAAGGAGGAGGCCAAGAAGGAATCTGTCAAACTACTTCAGGTTATTGCGAACTCTGGCAGGACATACAAG
GAACTCATTTGTGAAAGCTATGGTGTACGATCCATAGCAGAATTTTTGGCAAAGTCTAAGTCAGAAGAGA
CCCAGGAGGAAGTGCAGGTTCTGTTGGATTCTTTGGTCCACGGCAATCCCAAGTACCAAAATCAAGTGTA
TAAAGGTCTAATAGCTTTGCTGCCCTGCGAGTCCCCAAAAGCCCAGCAGCTGTCCCTGCAGACTCTCAGG
ACTGCCCAGCCAATCATTGGGACCACACACCCCAGCATCGTGGACTGCGTGCTGAAGGTGCTGGGCACGA
TGCACCTGGAAGTCCAGTATGAAGCCATCGAGTTGATCAAAGACCTGGTCGGTTACGATGTGCGCCAGGC
GCTGCTCAAGGGCCTCGTGGCGCTGCTGATACCGTCGGTCAAGGAGATCTCCAAACTGCAGGCCAAGATC
CTCAGTGACCCCTCGGTTCTCCAGCTCACCCCCAGCCTGCCGATGTTTTTGCAGCAGGCCGCGGCCGCCA
AGGCCATCGGGGTCCTGGCGCGCAACGACATGAGCATCGCCGAGGAGCTGCTGTACCTGCGCGTGGTGCG
TGGCCTAATGGCCGCCATGGGCAACACGGACCACAGCAACAGCCAGCGGCTGGCCAGCCTCACGCTGGAG
TGCTTCGTGCAGATGTTCCCCTTGGTGGCGGAGCACGTGCGCAAGTGCATGGGGGAGGAACTCTACCAGC
TCTTCCTGAGCAACGCTGAGGACTTGTACATGAAAATAGACAGCATTCAGGCGGACATCTTGGCGGCCAA
CACAGTCAATGTTACCAAAGCCCTGTGCCTCCATGGCAGCTCCTACAGCATGAACACTCTCTATGGCTCG
CGCGATTCGGCTCAGATGGCCTACCTCACACACTTCGAGGAGGATGTAGAATCAAAGGAGTAA

Translation (440 aa):
MTSIKEQAAISRLLSFLQEWDNAGKVARSHILDKFIETNQGKTAPELEQEFSQGASLFLVRLTTSLRITY
MTDSCLEKLLRSIGIFLSAVSSNRYLIEFLEVGGVLTLLEILGLEKIKEEAKKESVKLLQVIANSGRTYK
ELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLVHGNPKYQNQVYKGLIALLPCESPKAQQLSLQTLR
TAQPIIGTTHPSIVDCVLKVLGTMHLEVQYEAIELIKDLVGYDVRQALLKGLVALLIPSVKEISKLQAKI
LSDPSVLQLTPSLPMFLQQAAAAKAIGVLARNDMSIAEELLYLRVVRGLMAAMGNTDHSNSQRLASLTLE
CFVQMFPLVAEHVRKCMGEELYQLFLSNAEDLYMKIDSIQADILAANTVNVTKALCLHGSSYSMNTLYGS
RDSAQMAYLTHFEEDVESKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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