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Report for CCDS53165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53165.1 Public Mus musculus X Chic1 23 108 98 CCDS HistoryNCBI Gene:12212Re-query CCDS DB by CCDS ID:53165.1Re-query CCDS DB by GeneID:12212See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116547.2 ENSMUSP00000112246.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116547.2Link to Ensembl Protein Viewer:ENSMUSP00000112246.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116547Re-query CCDS DB by Protein ID:ENSMUSP00000112246
Original member NCBI NM_009767.2 NP_033897.1 Updated not alive Link to Nucleotide Sequence:NM_009767.2Link to Protein Sequence:NP_033897.1Re-query CCDS DB by Nucleotide ID:NM_009767Re-query CCDS DB by Protein ID:NP_033897
Current member NCBI NM_009767.3 NP_033897.1 Accepted alive Link to Nucleotide Sequence:NM_009767.3Link to Protein Sequence:NP_033897.1Re-query CCDS DB by Nucleotide ID:NM_009767Re-query CCDS DB by Protein ID:NP_033897Link to BLAST:NP_033897.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033897.1 227 Q8CBW7 227 100% 0 0

Chromosomal Locations for CCDS 53165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 103356585 103356889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103366214 103366268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103373599 103373754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103387255 103387311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103387987 103388046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103389460 103389510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGAGCATCCTGCTGCCCAACATGGCGGAGTTCGACACCATCTCGGAATTGGAGGAAGAAGAAGAGGCAG
CAACATCGTCGTCGTCTCCATCGTCGTCTCCGTCGTCGTCGTCGTCGTCGTCGGTATCTGGGCCCGATGA
GGACGAGGAAGATGAGGAGGAGGAAGAAGAGGAGGATGAAGAGGAGGAGGACGAGGAAGAAGAGGAGGAG
GAGGTGCCGCCCCCGCCTCGGGTAGTGAGCGAGGAGCATCTGCGGAGATATGCCCCAGACCCTGTGTTGG
TGCGCGGCGCCGGCCACATCACTGTGTTTGGATTGAGCAACAAGTTTGATACCGAATTTCCGTCAGTTCT
GACAGGGAAGGTGGCTCCAGAAGAATTTAAGACCAGCATTGGCCGTGTGAACTCATGCTTGAAAAAGGCT
CTCCCTGTCAATGTGAAATGGCTGCTGTGTGGATGTCTCTGCTGCTGCTGTACCCTGGGGTGCAGCCTGT
GGCCCGTGATTTGTCTCAACAAAAGAACCAGAAGATCGATTCAGAAGTTACTAGAATGGGAAAATAACAG
ATTATACCACAAGCTTGCTCTGCACTGGAAACTGACTAAAAGGAAATGTGAAACTAGCAATATGATGGAG
TATGTAATACTAATAGAATTCTTACCAAAATACCCCATATTCCGACCCGACTGA

Translation (227 aa):
MSILLPNMAEFDTISELEEEEEAATSSSSPSSSPSSSSSSSVSGPDEDEEDEEEEEEEDEEEEDEEEEEE
EVPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNSCLKKA
LPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLLEWENNRLYHKLALHWKLTKRKCETSNMME
YVILIEFLPKYPIFRPD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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