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Report for CCDS53064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53064.1 Public Mus musculus X Zfp280c 23 108 98 CCDS HistoryNCBI Gene:208968Re-query CCDS DB by CCDS ID:53064.1Re-query CCDS DB by GeneID:208968See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072292.11 ENSMUSP00000072138.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072292.11Link to Ensembl Protein Viewer:ENSMUSP00000072138.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072292Re-query CCDS DB by Protein ID:ENSMUSP00000072138
Original member Current member NCBI NM_001166649.2 NP_001160121.1 Accepted alive Link to Nucleotide Sequence:NM_001166649.2Link to Protein Sequence:NP_001160121.1Re-query CCDS DB by Nucleotide ID:NM_001166649Re-query CCDS DB by Protein ID:NP_001160121Link to BLAST:NP_001160121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160121.1 733 Q6P3Y5-3 733 100% 0 0

Chromosomal Locations for CCDS 53064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48543274 48543289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48543405 48543441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48543585 48543703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48547265 48547327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48548558 48548695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48550052 48550359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48553978 48554109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48558269 48558415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48559043 48559143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48559667 48559824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48563682 48563902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48566708 48566817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48566949 48567113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48569121 48569226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48572282 48572415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48572746 48572811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48578380 48578529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48588703 48588733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGATAAAGATAACTCTGTTCAAGAAAAAGATAATTCAAAAATGGCTGAACTTTTCATGGAATGTGAAG
AAGAAGAGTTGGAACCATGGCAGCAGAAAGTAGAAGAAAGTCAAAGTAAAGACGACGATGATGAGCTGAT
CTTTGTTGGAGAGATATCAAGTTCCAAGCCAGCCATTTCCAATATTTTGAACAGATGTAGCCCTGGTTCA
TCTTCAAAGGGACTAAAGAACGGTTCATTCAATCCAGCTATTTCTAATATATTCAAGCCTACGAGTCAAC
ACTACAGAAATCCATCATCGAATGCACTGGTTGCTTTGCCAAGCTTTCATCCTGCTCTCAAATCTTCAGA
GAGTTCTGATGGTCAGACTGTGTCTAAACTTGACTTTACCAAGACTTCACCCCAAGAGGATTCCGGTGCT
TGTTCGGTCTCACAGTCAGACTCGACCCAAGATATACCGTCTTCCAACATACTGCAACCGAGGACAGGTG
TCGATCAAACTTTAGGATTAAAACATCCTTCCACTTCCAAAGTAAACAGTGTTAATCCAAAAAAGCCAAA
GACGAGTGCGAGCATTTCTGAAACACGCCCTTGCTCTTCATCATCTTCACAGACGGCGCCTTCAGGGGCT
TCTTCCCAAACTGTACTATCAAATGTGAATACCTCATCAGTTCAGTCTGCACCTGGATCATCTTCACTAA
GATCTTGTCCAAAGTGCAATGTTAAGTTCCGACTTCTGGATCCTTTGAAGTGCCACATGAAGCGTTGCTG
CCCAGACATGATAAATAAGTTTCTGGAAACTCTCAAGTCAGAAAATTCAAAGGCTGTAAGCAAAGCTACC
ACTGACTCAGATAAAGAAAAACTGATCATGCTTGTCAGTGATTTTTATTATGGAAGACATGAAGGAACTA
TTGAGGAAAGCCAGAAGACTCACACCACTTTTAAATGTTTCAGTTGCACAAAAGTTCTCAAAAATAATAT
TAGGTTCATGAACCACATGAAACACCACTTGGAACTTGAAAAGCAGAACAACGAGACCTGGGAAAGCCAT
ACTACATGCCAACACTGCTACCGGCAGTACCCCAACCCCTTCCAGCTCCAGTGCCACATTGAGAGTACAC
ATACTCCTCATGATTTTTCTACTATTTGCAAGATCTGTGAATTGTCATTTGAAACAGAGCATATGCTTTT
ACAACACATGAAGGATACTCATAAACCTGGTGAAATGCCATATATTTGCCAGGTTTGCCAGTTTAGATCA
TCAATATTTTCTGATGTAGAAACTCACTTCAGATCATCTCATGAAAACACTAAGAACTTGCTATGTCCGT
TTTGCCTCAAAGTTAGTAGAATGGCAACCCCTTATATGAATCACTACATGAGACATCAGAAAAAAGGAAT
TTATCGTTGCCCGAAATGCAGACTACAATTTTTGACCTCCAAGGAGAAAACAGAACATAAGTTAGAACAT
CGCACATTTATAAAGCCTAAAGAACTAGAGGGATTGCCTCCTGGGACAAAAGTTATTATTCGAGCTTCAT
TAGGATCTAGTCAGTCAAGAGCCTCAAGCCCACCTTCTAGTACCATCCCAAGCACTTCTCTTCAGCTCTC
AGTTCCAAAGTCTAAAAGTACAACTACTAAGAATAACTCAAAAGTATCTGCAAATAAAGCTACCACCACT
AGCCCTCAAACAGTTGCAACCACAACTGGTAAGCCCAGTGCAAGTAAGCCAGGTACGGGGACAACTAAAT
CCAAAGCCAAGCCCTCCTACAAGCAAAAGAGACAACGCACCAGGAAAAACAAATTCAGCATAGATCTGAA
GAACTTAAGGTGTCACCAGGGAAGTCACATGTGTATTGAGTGCCGTTCCAAAATAAAAGATTTTTCAAGC
CACTTTTCTACACATATAAATTGTGATTTTTGCAAGTATACCACTAACTGTAACAAAGCCTTTACAAATC
ATATGAGCTCTCACAATGACCACCCAAGTAAGCAGCTTTATATTTTTAAGAAGCAATCACGAGCTCGCAG
GGGCATCACTCTAGTGTGCCTTAAATGTGACTTCCTAGCCGATACTTCTGGCTTAGACCGTATGGCTAAA
CACTTAAATCAACGTAAAACTCATACTTGCCAAGTTGTAATAGAGAATGTTACCGAAAGAGCCGTAACTT
CTGAATCCGCTTCTGATGGCTTGTTCAAATAG

Translation (733 aa):
MDKDNSVQEKDNSKMAELFMECEEEELEPWQQKVEESQSKDDDDELIFVGEISSSKPAISNILNRCSPGS
SSKGLKNGSFNPAISNIFKPTSQHYRNPSSNALVALPSFHPALKSSESSDGQTVSKLDFTKTSPQEDSGA
CSVSQSDSTQDIPSSNILQPRTGVDQTLGLKHPSTSKVNSVNPKKPKTSASISETRPCSSSSSQTAPSGA
SSQTVLSNVNTSSVQSAPGSSSLRSCPKCNVKFRLLDPLKCHMKRCCPDMINKFLETLKSENSKAVSKAT
TDSDKEKLIMLVSDFYYGRHEGTIEESQKTHTTFKCFSCTKVLKNNIRFMNHMKHHLELEKQNNETWESH
TTCQHCYRQYPNPFQLQCHIESTHTPHDFSTICKICELSFETEHMLLQHMKDTHKPGEMPYICQVCQFRS
SIFSDVETHFRSSHENTKNLLCPFCLKVSRMATPYMNHYMRHQKKGIYRCPKCRLQFLTSKEKTEHKLEH
RTFIKPKELEGLPPGTKVIIRASLGSSQSRASSPPSSTIPSTSLQLSVPKSKSTTTKNNSKVSANKATTT
SPQTVATTTGKPSASKPGTGTTKSKAKPSYKQKRQRTRKNKFSIDLKNLRCHQGSHMCIECRSKIKDFSS
HFSTHINCDFCKYTTNCNKAFTNHMSSHNDHPSKQLYIFKKQSRARRGITLVCLKCDFLADTSGLDRMAK
HLNQRKTHTCQVVIENVTERAVTSESASDGLFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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