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Report for CCDS53016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53016.1 Public Mus musculus X Araf 23 108 98 CCDS HistoryNCBI Gene:11836Re-query CCDS DB by CCDS ID:53016.1Re-query CCDS DB by GeneID:11836See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120356.7 ENSMUSP00000112513.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120356.7Link to Ensembl Protein Viewer:ENSMUSP00000112513.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120356Re-query CCDS DB by Protein ID:ENSMUSP00000112513
Original member Current member EBI ENSMUST00000122312.7 ENSMUSP00000112521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122312.7Link to Ensembl Protein Viewer:ENSMUSP00000112521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122312Re-query CCDS DB by Protein ID:ENSMUSP00000112521
Original member Current member NCBI NM_001159645.1 NP_001153117.1 Accepted alive Link to Nucleotide Sequence:NM_001159645.1Link to Protein Sequence:NP_001153117.1Re-query CCDS DB by Nucleotide ID:NM_001159645Re-query CCDS DB by Protein ID:NP_001153117Link to BLAST:NP_001153117.1

Chromosomal Locations for CCDS 53016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20849987 20850082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20850245 20850348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20851466 20851568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20851658 20851812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20851930 20852032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGAACCACCACGAGGCCCTCCTGTTAGTGGGGCTGAGCCATCTCGGGCAGTTGGCACTGTCAAAGTGT
ACCTGCCTAACAAGCAACGCACAGTGGTGACTGTCCGGGAAGGCATGAGTGTCTATGACTCTTTGGACAA
GGCCCTGAAGGTGCGGGGTCTCAACCAGGACTGCTGTGTGGTCTACAGGCTCATCAAAGGAAGAAAGACA
GTCACTGCCTGGGACACAGCCATTGCGCCTCTGGATGGTGAGGAGCTCATTGTGGAGGTCCTAGAAGATG
TGCCACTGACCATGCACAATTTTGTACGGAAGACATTCTTCAGCCTGGCCTTCTGTGACTTCTGCCTTAA
GTTTCTGTTCCATGGATTCCGCTGCCAGACCTGTGGCTACAAGTTCCACCAGCATTGTTCCTCCAAGGTC
CCCACCGTCTGCGTTGACATGAGTACCAACCGCCGACAGTTCTACCACAGCATCCAGGATCTGTCTGGAG
GCTCCAGGCAGCAGGAGGCTCCCTCAAATCTCTCTGTGAATGAGCTGCTAACCCCCCAGGGTCCCAGGTA
G

Translation (186 aa):
MEPPRGPPVSGAEPSRAVGTVKVYLPNKQRTVVTVREGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKT
VTAWDTAIAPLDGEELIVEVLEDVPLTMHNFVRKTFFSLAFCDFCLKFLFHGFRCQTCGYKFHQHCSSKV
PTVCVDMSTNRRQFYHSIQDLSGGSRQQEAPSNLSVNELLTPQGPR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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