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Report for CCDS52862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52862.1 Public Mus musculus 9 Lrrc1 23 108 98 CCDS HistoryNCBI Gene:214345Re-query CCDS DB by CCDS ID:52862.1Re-query CCDS DB by GeneID:214345See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113421.9 ENSMUSP00000109048.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113421.9Link to Ensembl Protein Viewer:ENSMUSP00000109048.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113421Re-query CCDS DB by Protein ID:ENSMUSP00000109048
Original member Current member NCBI NM_172528.3 NP_766116.3 Accepted alive Link to Nucleotide Sequence:NM_172528.3Link to Protein Sequence:NP_766116.3Re-query CCDS DB by Nucleotide ID:NM_172528Re-query CCDS DB by Protein ID:NP_766116Link to BLAST:NP_766116.3

Chromosomal Locations for CCDS 52862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 77432122 77432280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77433994 77434130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77435047 77435219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77442177 77442292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77451358 77451441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77452603 77452721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77455158 77455302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77457390 77457464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77457831 77457894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77458071 77458127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77468558 77468647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77472152 77472230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77499234 77499351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77544024 77544047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGTGGGGACCCAGCAGCGCGAAACAATTTTTCCAGCTAGTCAAATTACGGAAGCTTGGGCTCAGTGATA
ATGAAATTCAGCGGCTCCCTCCAGAAATAGCAAACTTCATGCAGCTCGTGGAACTTGACGTGTCCCGGAA
TGATATACCTGAAATTCCAGAAAGCATCGCCTTCTGTAAAGCGCTGCAGGTAGCTGACTTCAGCGGAAAC
CCACTCACCAGGTTGCCTGAGAGCTTTCCTGAACTACAGAACTTAACGTGTCTTTCTGTAAATGACATCT
CGCTGCAGTCTCTGCCAGAGAATATTGGAAATCTCTATAACCTGGCTTCACTGGAACTGAGAGAGAATCT
TCTTACATATCTTCCTGACTCTCTTACCCAACTAAGGAGACTAGAAGAACTTGATTTAGGAAACAATGAA
ATCTACAATTTGCCAGAATCAATTGGGGCACTCCTACATCTGAAGGATCTCTGGTTGGATGGAAATCAGC
TGTCTGAATTACCTCAGGAAATCGGCAATCTGAAGAACCTCCTCTGCCTAGATGTCTCTGAAAACAGGCT
GGAGAGACTTCCTGAAGAGATCAGCGGCCTGACTTCTTTGACATACTTAGTCATTTCCCAGAACTTGCTA
GAAACAATTCCTGAGGGCATTGGAAAACTAAAGAAGCTGTCAATCTTGAAGTTGGATCAGAACAGACTCA
CACAGTTGCCCGAAGCAATTGGGGATTGTGAAAATCTCACGGAGTTAGTTCTTACAGAAAACCGGCTCCT
GACTTTACCTAAGAGCATTGGAAAACTTAAGAAGTTGAGCAACTTGAATGCAGACAGGAATAAATTAGTG
TCATTGCCAAAAGAGATTGGCGGGTGCTGCAGCCTCACCATGTTCTGCATCCGGGACAACAGACTGACTC
GGTTACCTGCAGAGGTGTCACAGGCCGTGGAACTTCATGTCCTCGACGTGGCAGGGAACAGGTTACATCA
TCTGCCCTTATCGCTGACCACCCTGAAGTTGAAGGCCCTGTGGTTATCTGACAACCAGTCGCAGCCTCTC
CTCACGTTCCAGACAGACATAGACCGAGCCACCGGGGAGAAGATTTTAACGTGTGTCTTACTTCCTCAGA
TGCCTTCTGAACCCATCTGCCAAGAGAGCCTGCCGCGTTGCGGTGCCCTGGAGAGTCTGGTAACTGACAT
GTCTGAGGAAGCCTGGAATGACCGCTCGGTCCACAGAGTTAGTGCAATCCGGTTTTTGGAAGACGAGAAG
GACGAAGATGAAAACGAAACGAGAACACTTCAGAGGCGAGCCACTCCACACCCAGGGGAATTAAAGAACA
TGAAAAAGACGGTGGAGAATTTACGGAACGACATGAATGCCGCCAAAGGACTGGATTCAAACAAAAACGA
GGTCAACCACGCCGCTGAGCGCGTGACCACATCGGTGTAG

Translation (479 aa):
MWGPSSAKQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESIAFCKALQVADFSGN
PLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNE
IYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTYLVISQNLL
ETIPEGIGKLKKLSILKLDQNRLTQLPEAIGDCENLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLV
SLPKEIGGCCSLTMFCIRDNRLTRLPAEVSQAVELHVLDVAGNRLHHLPLSLTTLKLKALWLSDNQSQPL
LTFQTDIDRATGEKILTCVLLPQMPSEPICQESLPRCGALESLVTDMSEEAWNDRSVHRVSAIRFLEDEK
DEDENETRTLQRRATPHPGELKNMKKTVENLRNDMNAAKGLDSNKNEVNHAAERVTTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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