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Report for CCDS52855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52855.1 Public Mus musculus 9 Ccpg1 23 108 98 CCDS HistoryNCBI Gene:72278Re-query CCDS DB by CCDS ID:52855.1Re-query CCDS DB by GeneID:72278See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150826.8 ENSMUSP00000122966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150826.8Link to Ensembl Protein Viewer:ENSMUSP00000122966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150826Re-query CCDS DB by Protein ID:ENSMUSP00000122966
Original member Current member NCBI NM_001114328.2 NP_001107800.1 Accepted alive Link to Nucleotide Sequence:NM_001114328.2Link to Protein Sequence:NP_001107800.1Re-query CCDS DB by Nucleotide ID:NM_001114328Re-query CCDS DB by Protein ID:NP_001107800Link to BLAST:NP_001107800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107800.1 753 Q640L3-1 753 100% 0 0

Chromosomal Locations for CCDS 52855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72997411 72997470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72999024 72999144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72999463 72999539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73001677 73001875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73005641 73005892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73010297 73010412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73011930 73013366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGTCTGAAAGTTCCAGCGACAGCGACTCATCTTGTGGCTGGACTGTCATCAATCATGAGGGTTCTGATA
TAGAGATCGTGAATTCTGCCACAGCCAGTGACAACTGTGGACTGACTCTAGAATGTTCCTTAGTAGAACA
AGAGGAGCTGCCCGTTCTTTATGTAGGGCATGGAGGTGAAGAAAGCAGCGCAAACAACACATCGTCAGTG
GGAGAAACCATGTTGTCATCAATGAGAGAAACCAAGTCAGCAGCTGAGGTGGAGGAAGCACCTTCCCCTG
AAGACAATGTCTATTTCGGAACTACTAGTGACGATTCGGATATTGTTACACTTGAACCACCTAAGCTGGA
AGAAATGGGGAACCAGGAAGTTACAATTCAAGAAGCGCCCAGCTCAGATGACCTTAACATGGGCTCTTCC
TCCAGCAGCCAGTACGCCTTCTGCCAGCCAGAACCCGTCTTTTCATCTCAGCCTAGTGATGAGGAATCCA
GTAGCGATGACACCAGCCACGAGCCCAGCCCTGCTCCTAGACGGCGCCGCAACAGGAAGAAGACCGTTTC
TATCTCAGAGTCTGAGGAGCCTCCACTCGCTGAGCCGGAAGATGAGCCCTCCAAGGAGCCAAGTAAACGC
CACTTTAGTCGTGGTCTCAACAAGTGTGTTATCCTGGCCTTGGTGATTGCTGTCAGCATGGGATTTGGAC
ATTTCTATGGCACAATCCAGATTCAGAAGCAGTTAGTCAGAAAGACCCACGAAGATGAGCTGGATGGTGT
GAAGGGTTATCTCTCACAGCGCAAGCAGGAACAAGAGTCTTTTCTAGATTTCAAGTCGCTGAAAGAAAAC
CTTGAGAGGTGTTGGACCGTTACTGAATCAGAGAAGATTACCTTTGAAACTCAGAAGAAGAACCTTGCTG
CAGAAAACCAGTATTTACGAATATCTCTGGAGAAGGAAGAACAAGCCCTGTCTTCATTACAGGAAGAGCT
ACGGCAACTAAGGGAGCAGATTAGATTGTTGGAGGATAAAGGCACAAGCACGCAGTTAGTTAGGGAGAAC
CAGGTCCTTAAGCAGTACTTAGAAGTGGAAAAGCAGAAAACAGATAGCTTCCTTAGGGAAAGGGAGATGC
TCTTGGAGGAGGCAAGGATGCTGAAAAGGGACCTGGAGAGGGAACAGCTCACAGCCATGGCTCTGCGGGC
AGAACTTGAGCAGTTCATCCCTGGCCAGGCACAGAGCCGTGCGGAGTCTCCTAGTGTGCAGACTGAAGAG
AAGGAAGTGGGGCTGTTACAGCAGAGGCTGGCTGAGCTGGAGCAGAAGCTCATCTTTGAGCAGCAGCGCT
CGGATTTGTGGGAGAGACTGTACGTTGAGGCAAAGGATCAACATGGAAAGCAGGAGACAGACGGGAGGAA
GAGAGGAAGCAGAGGAAGCCACAGGGCGAAGAGCAAGTCGAAGGAGACATTTCTGGGGACAGTTAAGGAA
ACATTTGATGCTATGAAGAATTCTACCAAGGAGTTTGTGAGACATCATAAAGAAAAAATCAAGCAGGCGA
AAGAAGCTGTGAAGGAGAATCTGAAAAAATTCTCAGATTCAGTCAAATCCACTTTTCGCCATTTCAAAGA
TACTACCAAGAATATCTTTGATGAAAAGGGCAGCAAGAGATTCAGGGCTCCAAAAGAAGCGGCAACTGAA
AAGACAAGAACAGCTTATAGTTATTCCTCATACTCACAGCAGGAGGCACCAAACCAAAACCAGAATTGCA
GGCGCCCTTCTGCACAGAGGGATGGAGGGAGAGAAAAGCCCAGTCACTCTGAAGAAATTAGAAAGAATGC
AAATTCATATACATACAAGGCCAAGTCTGACTGCAGAGGCACCCATTCCACCAGAAGGGTTTGTTCAGGT
ATGTTTGAATGTGCTGGACAGGAAGCCATTAGCCCTGTTAATAAGGCGAGTCCTGTTAGGATGAATGACT
TCAAACAGCTGATTCACTGGTACTTACTCAATGAACTGGAGACTTTTCACCACTGGAAAGAACTGGATCA
GTTTATCAGTCCGTTTTTTCCGAATGGTGTCTTTAGACATGACCAGCAGCTCTTCGCCGACTTTGTTGAT
GATGTGAAAGGTTACCTTAAGAGCATAAAGGAGTATCGAGTAGAGGATGGCAATCTGGAGAAGTTGGACG
GATGTATATATAGACACTTTGGGCATGTTTTTGCCCTGCCATTCGGACCCAGGTCGGTTTACATAAAACC
ATGTTACTATAATAGCTTCTAA

Translation (753 aa):
MSESSSDSDSSCGWTVINHEGSDIEIVNSATASDNCGLTLECSLVEQEELPVLYVGHGGEESSANNTSSV
GETMLSSMRETKSAAEVEEAPSPEDNVYFGTTSDDSDIVTLEPPKLEEMGNQEVTIQEAPSSDDLNMGSS
SSSQYAFCQPEPVFSSQPSDEESSSDDTSHEPSPAPRRRRNRKKTVSISESEEPPLAEPEDEPSKEPSKR
HFSRGLNKCVILALVIAVSMGFGHFYGTIQIQKQLVRKTHEDELDGVKGYLSQRKQEQESFLDFKSLKEN
LERCWTVTESEKITFETQKKNLAAENQYLRISLEKEEQALSSLQEELRQLREQIRLLEDKGTSTQLVREN
QVLKQYLEVEKQKTDSFLREREMLLEEARMLKRDLEREQLTAMALRAELEQFIPGQAQSRAESPSVQTEE
KEVGLLQQRLAELEQKLIFEQQRSDLWERLYVEAKDQHGKQETDGRKRGSRGSHRAKSKSKETFLGTVKE
TFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKNIFDEKGSKRFRAPKEAATE
KTRTAYSYSSYSQQEAPNQNQNCRRPSAQRDGGREKPSHSEEIRKNANSYTYKAKSDCRGTHSTRRVCSG
MFECAGQEAISPVNKASPVRMNDFKQLIHWYLLNELETFHHWKELDQFISPFFPNGVFRHDQQLFADFVD
DVKGYLKSIKEYRVEDGNLEKLDGCIYRHFGHVFALPFGPRSVYIKPCYYNSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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