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Report for CCDS52851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52851.1 Public Mus musculus 9 Gtf2a2 23 108 98 CCDS HistoryNCBI Gene:235459Re-query CCDS DB by CCDS ID:52851.1Re-query CCDS DB by GeneID:235459See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118198.7 ENSMUSP00000113501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118198.7Link to Ensembl Protein Viewer:ENSMUSP00000113501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118198Re-query CCDS DB by Protein ID:ENSMUSP00000113501
Original member Current member EBI ENSMUST00000119413.7 ENSMUSP00000113697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119413.7Link to Ensembl Protein Viewer:ENSMUSP00000113697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119413Re-query CCDS DB by Protein ID:ENSMUSP00000113697
Original member Current member NCBI NM_001039519.2 NP_001034608.1 Accepted alive Link to Nucleotide Sequence:NM_001039519.2Link to Protein Sequence:NP_001034608.1Re-query CCDS DB by Nucleotide ID:NM_001039519Re-query CCDS DB by Protein ID:NP_001034608Link to BLAST:NP_001034608.1
Original member Current member NCBI NM_001282083.1 NP_001269012.1 Accepted alive Link to Nucleotide Sequence:NM_001282083.1Link to Protein Sequence:NP_001269012.1Re-query CCDS DB by Nucleotide ID:NM_001282083Re-query CCDS DB by Protein ID:NP_001269012Link to BLAST:NP_001269012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034608.1 109 Q80ZM7 109 100% 0 0
NP_001269012.1 109 Q80ZM7 109 100% 0 0

Chromosomal Locations for CCDS 52851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 70015339 70015410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70016819 70016923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70019389 70019515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70022437 70022462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGCCTATCAGTTATACAGAAATACAACTTTGGGGAACAGTCTTCAAGAGAGCCTTGATGAGCTCATAC
AGTCTCAACAGATCACCCCCCAGCTTGCGCTTCAAGTTCTACTTCAGTTTGATAAAGCTATAAATTCAGC
ATTGGCTCAGAGAGTCAGGAACAGAGTCAATTTCAGGGGCTCTCTAAATACATACAGATTCTGCGATAAT
GTTTGGACTTTTGTATTGAATGATGTTGAATTCAGAGAGGTGACAGAACTTATTAAAGTGGATAAAGTGA
AAATTGTAGCCTGTGATGGTAAAAATACTGGCTCGAATACTACGGAATGA

Translation (109 aa):
MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDN
VWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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