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Report for CCDS52625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52625.1 Public Mus musculus 8 N4bp1 23 108 98 CCDS HistoryNCBI Gene:80750Re-query CCDS DB by CCDS ID:52625.1Re-query CCDS DB by GeneID:80750See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034074.7 ENSMUSP00000034074.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034074.7Link to Ensembl Protein Viewer:ENSMUSP00000034074.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034074Re-query CCDS DB by Protein ID:ENSMUSP00000034074
Original member Current member NCBI NM_030563.2 NP_085040.2 Accepted alive Link to Nucleotide Sequence:NM_030563.2Link to Protein Sequence:NP_085040.2Re-query CCDS DB by Nucleotide ID:NM_030563Re-query CCDS DB by Protein ID:NP_085040Link to BLAST:NP_085040.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085040.2 893 Q6A037 893 100% 0 0

Chromosomal Locations for CCDS 52625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 86844687 86845041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86846815 86846922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86848447 86848554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86851625 86851721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86853159 86853289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86860426 86862110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86884822 86885019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGGCGGCCCGGGTGGTGCTGGATGAGTTCACGGCGCCCGCGGAGAAGGCGGCGCTGCTGGAGCGGAGCC
GCGGGCGCATCGAGGCTCTGTTCGGGGTGGGCTTGGCCGTGCTCGGCGCCCTCGGGGCGGAGGAGCCGCT
GCCCGCGCGTATCTGGCTGCAACTCCGCGGCGCGCAGGAGGCGGTGCACAGCGCCAAGGAGTATATCAAG
GGGATCTGCGAGCCGGAGCTGGAGGAGAAAGAGTGCTACCCCAAGGCCATGCACTGCATTTTTGTCGGGG
CACAAAGCCTCTTTTTGAAGAGCTTAATTCAGGATACGTGTGCTGACCTCTGTGTTTTAGATACTGGGCT
TCTTGGCATCCGAGGAAGCGCTGAAGCTGTGGTCATGGCCAGGAGTCACATTCAGCAGTTTGTGAAGCTC
TTTGAGAGCAACGAGAACCTCCCCAGTAATCAGAGAGAGTCGGAAATCAAACGGGAATTCAGACAGTTTG
TTGAAGCCCACGCAGACAGTTATACAATGGACCTGTTGATTCTGCCTACTTCCTTGAAGAAGGAACTACT
GAGTCTCACACAAGGGGAAGAGAGTCTGTTTGAAACAGATGATGATGTCATTACTGTTGGAGATGTACGG
CCACCAGAGTACACACAGAGTGCTGCCACAGGACCGAGTAGTGCTAGAGATGAAGTTGTTGTACAGGAAG
ATTCTAGAAATAAAGCTAGGACCCCTGTTTCTGAGCTTACAAAACACATGGACACAGTCTTCTCTAGTTC
ACCAGATGTGCTTTTTGTTCCGGTGAATGGCCTAAGTCCAGACGAAGATGCTCTTTCCAAAGACAGAGTT
TGTCACAAGAGGAGATCTTCTGATACGGAAGAAAGGCACACCAAGAAGCAGTTTTCCTTGGAGAATGTTC
CAGAAGGGGAGCTTTTGCCAGATGGTAAGGGGTCAGCTGGAAATGAAGTTATTGACCTGTCTGATCCTGC
TTCAAACTCTACAAATCTAAGCCCCGATGGAAAAGACACTACAGAAGAAATGGAATACAATATCCTTGTT
AACTTCTTTAAAACCATGGGCTATTCCCAAGAGATTGTTGAAAAGGTCATTAGGGAGTATGGGCCTTCTA
CAGAACCGTTACTGCTCTTAGAGGAAATTGAAAAAGAAAATAAAAGGCTCCAAGAAGACCGAGACTTTCC
ACCTTGTACTGTGTATCCAGATGCCAGTCAGAGCAGAAATGCAGGGGTTGGGAGCACCACAAATGAGCTC
ACAGCAGACTCCACGCCAAAGAAAGCACAGAGTCACACAGAGCAAAGTATGGTGGAGAGATTCTCGCAGT
TACCGTTCAAAGACTCTAAACACTGTACCTCAAATTGCAAAGTTAATTCTTTCAGAACAGTGCCAGTAGG
ACAAAAACAGGAAATCTGGGGTTCAAAGCAGAACTCAAGTTGTACTGTCGACCTGGAAACTGATGGCCAC
TCGGCCTCTGCCGCCTCTGCCAGCCCTAAAGACATCAGTTTTGTTTCAAGGGGAGCTTCAGGGCACCAAC
AGAGAAACCCAGCTTTTCCTGAAAATGGTTTTCAACAGCAAACAGAACCTTTGCTTCCAAATAATACGAA
GCCTGCCTGTGAAAAGCGTTCTGGCTCCTGTAGCTCTCCTCAGCCTAAGCCAAATTATCCCCCACTTTCT
CCACCACTGCCGCTGCCCCAGCTGCTACCTTCAGTTACTGAGGCTCGATTGGGAGGGTCCTCTGACCATA
TCGATTCCTCAGTTACAGGGGTTCAAAGATTTCGAGATACCTTAAAAATACCATACAAGCTGGAATTAAA
AAACGAACCAGGACGAGCAGATTTGAAGCATATTGTTATAGATGGAAGTAATGTTGCAATTACCCACGGT
CTGAAAAAGTTCTTTAGTTGCCGTGGAATAGCAATTGCAGTTGAGTATTTTTGGAAGCTCGGCAACAGGA
ACATCACTGTGTTTGTCCCACAGTGGAGAACAAGACGGGATCCTAATATCACAGAACAGCACTTCTTAAC
CCAGCTCCAGGAGCTTGGAATATTATCTTTAACTCCTGCCCGGATGGTCTTTGGAGAAAGAATTGCTTCT
CATGATGACAGGTTTCTACTGCACTTAGCGGACAAGACTGGGGGTATAATTGTAACAAACGATAACTTCA
GAGAGTTTGTGACCGAGTCGGTGTCCTGGAGAGAAATTATTACCAAAAGACTGCTTCAGTACACGTTCGT
GGGGGACATATTTATGGTTCCTGATGACCCTCTGGGAAGAAACGGACCTCGGCTAGAAGAATTTCTTCGA
AAGGAGGCCTTTCTTAGACACATGCAGCCGCTACTCAATGCCCTGCCAAGTGTGGGCACATTTGACCCTG
GCTTCCGGAGTCCCAGCACGCAGGTAGCCAACAACAGCCACCAGCCTCCACCCCGGATCCAGACCTCTTC
AAGCCCTTGGCTTCCCCAGCAGTCCCACTTCACAGCTCTGGCCACCCTTCCCAGTATGCAGCAGAACCCA
CCCCTGCCAGCACAGAGATCTTCTGCAGAGACCAGCGAGCTGAGGGAGGCGCTGCTAAAGATCTTCCCTG
ACTCTGAGCAAAAGCTGAAGATCGACCAGATCCTGGCAGCTCATCCGTACATGAAAGACCTGAATGCCCT
GTCGGCCCTGGTGTTGGACTGA

Translation (893 aa):
MAARVVLDEFTAPAEKAALLERSRGRIEALFGVGLAVLGALGAEEPLPARIWLQLRGAQEAVHSAKEYIK
GICEPELEEKECYPKAMHCIFVGAQSLFLKSLIQDTCADLCVLDTGLLGIRGSAEAVVMARSHIQQFVKL
FESNENLPSNQRESEIKREFRQFVEAHADSYTMDLLILPTSLKKELLSLTQGEESLFETDDDVITVGDVR
PPEYTQSAATGPSSARDEVVVQEDSRNKARTPVSELTKHMDTVFSSSPDVLFVPVNGLSPDEDALSKDRV
CHKRRSSDTEERHTKKQFSLENVPEGELLPDGKGSAGNEVIDLSDPASNSTNLSPDGKDTTEEMEYNILV
NFFKTMGYSQEIVEKVIREYGPSTEPLLLLEEIEKENKRLQEDRDFPPCTVYPDASQSRNAGVGSTTNEL
TADSTPKKAQSHTEQSMVERFSQLPFKDSKHCTSNCKVNSFRTVPVGQKQEIWGSKQNSSCTVDLETDGH
SASAASASPKDISFVSRGASGHQQRNPAFPENGFQQQTEPLLPNNTKPACEKRSGSCSSPQPKPNYPPLS
PPLPLPQLLPSVTEARLGGSSDHIDSSVTGVQRFRDTLKIPYKLELKNEPGRADLKHIVIDGSNVAITHG
LKKFFSCRGIAIAVEYFWKLGNRNITVFVPQWRTRRDPNITEQHFLTQLQELGILSLTPARMVFGERIAS
HDDRFLLHLADKTGGIIVTNDNFREFVTESVSWREIITKRLLQYTFVGDIFMVPDDPLGRNGPRLEEFLR
KEAFLRHMQPLLNALPSVGTFDPGFRSPSTQVANNSHQPPPRIQTSSSPWLPQQSHFTALATLPSMQQNP
PLPAQRSSAETSELREALLKIFPDSEQKLKIDQILAAHPYMKDLNALSALVLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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