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Report for CCDS52333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52333.1 Public Mus musculus 7 Trpc2 23 108 98 CCDS HistoryNCBI Gene:22064Re-query CCDS DB by CCDS ID:52333.1Re-query CCDS DB by GeneID:22064See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124189.2 ENSMUSP00000116934.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124189.2Link to Ensembl Protein Viewer:ENSMUSP00000116934.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000124189Re-query CCDS DB by Protein ID:ENSMUSP00000116934
Original member Current member NCBI NM_001109897.2 NP_001103367.1 Accepted alive Link to Nucleotide Sequence:NM_001109897.2Link to Protein Sequence:NP_001103367.1Re-query CCDS DB by Nucleotide ID:NM_001109897Re-query CCDS DB by Protein ID:NP_001103367Link to BLAST:NP_001103367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103367.1 890 Q9R244-4 890 100% 0 0

Chromosomal Locations for CCDS 52333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102083172 102083186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102083861 102084580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102086398 102086610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102087516 102087680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102088116 102088290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102089101 102089301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102089913 102090075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102090523 102090615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102093530 102093722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102094228 102094355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102094495 102094573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102095168 102095300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102095857 102096251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2673 nt):
ATGGACCCCCTTTCGCCACAGCCCAACTGGACTGAGATTGTGAACAAAAAGCTCAAATTCCCCCCCACAC
TCCTGCGTGCCATCCAGGAGGGCCAGCTGGGTCTTGTGCAGCAGCTGCTGGAATCCAGTTCCGATGCCTC
GGGTGCTGGGCCAGGTGGTCCTCTGCGGAATGTGGAAGAGTCTGAGGACCGCTCCTGGAGGGAAGCCCTC
AACCTGGCCATCCGCCTGGGCCACGAGGTCATCACTGATGTTCTGCTGGCCAATGTCAAATTCGACTTTC
GGCAGATCCACGAAGCCCTGCTAGTGGCTGTGGACACAAACCAGCCAGCAGTGGTGCGTCGCCTGCTAGC
GCGGCTGGAGCGGGAGAAAGGTCGAAAAGTAGACACCAAGTCTTTCTCTCTAGCCTTCTTTGACTCATCG
ATTGATGGCTCCCGCTTTGCCCCTGGTGTCACTCCACTCACACTGGCCTGCCAGAAGGACCTGTATGAGA
TTGCCCAGCTGCTTATGGACCAGGGCCATACCATTGCTCGGCCCCACCCAGTTTCCTGTGCCTGCCTCGA
GTGCAGCAATGCCCGCCGATACGACCTGCTGAAGTTCTCACTATCCCGAATCAACACCTACCGAGGCATT
GCAAGCCGGGCTCACCTCTCGCTGGCCAGTGAGGATGCCATGCTGGCCGCTTTTCAGCTCAGCCGGGAGC
TCAGGCGCCTTGCACGAAAGGAGCCTGAGTTTAAGCCTCAGTACATTGCCCTGGAGTCTCTCTGCCAGGA
CTATGGCTTCGAGTTGCTGGGCATGTGCCGAAATCAGAGTGAGGTCACCGCAGTGCTCAATGACCTGGGT
GAGGATAGTGAGACTGAGCCTGAGGCTGAGGGCCTGGGTCAGGCCTTTGAGGAGGGCATCCCCAACCTGG
CAAGACTGCGGTTGGCTGTCAACTACAACCAGAAACAGTTTGTAGCACATCCCATCTGCCAGCAAGTTCT
GTCTTCCATCTGGTGTGGGAACCTGGCTGGCTGGCGTGGAAGCACCACCATCTGGAAGCTCTTTGTTGCC
TTCCTCATCTTCCTCACCATGCCCTTCCTCTGCATTGGCTACTGGCTGGCGCCCAAGTCCCAGCTGGGCC
GCCTGCTGAAGATCCCGGTGCTGAAGTTCCTGCTGCATTCTGCCTCCTACCTGTGGTTCCTTATCTTCTT
GCTGGGAGAGTCTCTGGTCATGGAGACCCAGCTGAGCACCTTCAAAGGCCGCAGCCAGAGTGTCTGGGAG
ACTTCACTACATATGATCTGGGTCACAGGCTTCCTATGGTTTGAATGCAAGGAGGTGTGGATCGAGGGCT
TGCGGAGCTACCTCCTGGACTGGTGGAACTTCCTGGACGTGGTCATCCTGTCCCTGTACTTGGCATCCTT
TGCACTGCGCCTCCTCCTGGCTGGGCTTGCCTACATGCACTGCCGTGATGCCTCAGACAGCACCACCTGC
CGCTATTTCACCACAGCTGAGAGAAGTGAGTGGCGTACAGAGGACCCCCAGTTTCTGGCTGAGGTGCTCT
TTGCTGTCACCAGCATGCTCAGCTTCACCCGACTGGCATATATTCTGCCAGCTCACGAATCGCTGGGCAC
ACTGCAGATCTCCATCGGCAAGATGATTGACGACATGATCCGGTTCATGTTCATCCTCATGATCATCCTG
ACTGCCTTCCTCTGTGGCCTCAACAACATCTATGTGCCCTACCAGGAATCCGAGAAGCTAGGCAATTTCA
ACGAAACGTTCCAGTTTCTCTTTTGGACCATGTTCGGCATGGAAGAGCACACAGTGGTGGACATGCCTCA
GTTCCTGGTGCCTGAGTTCGTGGGCAGGGCCATGTACGGCATCTTTACCATCGTCATGGTCATTGTGCTA
CTTAACATGCTTATTGCCATGATCACCAACTCCTTCCAGAAGATCGAGGATGATGCTGATGTGGAGTGGA
AGTTTGCTCGCTCCAAGCTCTACCTGTCCTACTTCCGAGAGGGTCTGACGCTGCCTGTGCCCTTTAACAT
CCTGCCATCCCCAAAGGCCGCCTTCTACCTCGTCAGGAGAATTTTCCGGTTCCTTTGCTGTGGCTCCTCC
TGCTGCAAAGCCAAGAAGTCGGACTACCCGCCCATCGGGACCTTTACCAACCCCGGGGCAAGGGCGGGCT
CCGCCGGGGAAGGAGAACGCGTGTCCTACCGCCTTCGAGTCATCAAGGCTCTGGTGCAGCGCTACATAGA
GACTGCCCGGCGCGAGTTCGAGGAGACCCGTCGGAAAGACCTGGGCAACAGACTGACAGAGCTGACCAAG
ACTGTGTCTCGACTGCAAAGCGAGGTGGCCAGTGTGCAGAAGAACCTGGCGGCGGGAGGGGCACCACGGC
CTCCGGATGGTGCCAGCATCCTCAGTAGATACATCACCCGAGTGCGCAACAGCTTCCAGAACCTGGGCCC
CCCTACCTCTGACACCCCAGCAGAGCTGACTATGCCTGGGATTGTGGAGACCGAAGTCTCTTTAGGAGAT
GGCCTTGATGGCACAGGTGAAGCTGGAGCTCCCGCTCCTGGAGAGCCCGGCTCTTCCTCCTCTGCCCATG
TGCTGGTTCACAGGGAGCAAGAAGCAGAGGGGTCAGGGGACTTGCTCCTGGAAGGAGATCTGGAGACCAA
GGGCGAGTCCTAA

Translation (890 aa):
MDPLSPQPNWTEIVNKKLKFPPTLLRAIQEGQLGLVQQLLESSSDASGAGPGGPLRNVEESEDRSWREAL
NLAIRLGHEVITDVLLANVKFDFRQIHEALLVAVDTNQPAVVRRLLARLEREKGRKVDTKSFSLAFFDSS
IDGSRFAPGVTPLTLACQKDLYEIAQLLMDQGHTIARPHPVSCACLECSNARRYDLLKFSLSRINTYRGI
ASRAHLSLASEDAMLAAFQLSRELRRLARKEPEFKPQYIALESLCQDYGFELLGMCRNQSEVTAVLNDLG
EDSETEPEAEGLGQAFEEGIPNLARLRLAVNYNQKQFVAHPICQQVLSSIWCGNLAGWRGSTTIWKLFVA
FLIFLTMPFLCIGYWLAPKSQLGRLLKIPVLKFLLHSASYLWFLIFLLGESLVMETQLSTFKGRSQSVWE
TSLHMIWVTGFLWFECKEVWIEGLRSYLLDWWNFLDVVILSLYLASFALRLLLAGLAYMHCRDASDSTTC
RYFTTAERSEWRTEDPQFLAEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGKMIDDMIRFMFILMIIL
TAFLCGLNNIYVPYQESEKLGNFNETFQFLFWTMFGMEEHTVVDMPQFLVPEFVGRAMYGIFTIVMVIVL
LNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTLPVPFNILPSPKAAFYLVRRIFRFLCCGSS
CCKAKKSDYPPIGTFTNPGARAGSAGEGERVSYRLRVIKALVQRYIETARREFEETRRKDLGNRLTELTK
TVSRLQSEVASVQKNLAAGGAPRPPDGASILSRYITRVRNSFQNLGPPTSDTPAELTMPGIVETEVSLGD
GLDGTGEAGAPAPGEPGSSSSAHVLVHREQEAEGSGDLLLEGDLETKGES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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