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Report for CCDS52303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52303.1 Public Mus musculus 7 Vmn2r79 23 108 98 CCDS HistoryNCBI Gene:621430Re-query CCDS DB by CCDS ID:52303.1Re-query CCDS DB by GeneID:621430See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164462.2 ENSMUSP00000132478.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164462.2Link to Ensembl Protein Viewer:ENSMUSP00000132478.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164462Re-query CCDS DB by Protein ID:ENSMUSP00000132478
Original member Current member NCBI NM_001105190.1 NP_001098660.1 Accepted alive Link to Nucleotide Sequence:NM_001105190.1Link to Protein Sequence:NP_001098660.1Re-query CCDS DB by Nucleotide ID:NM_001105190Re-query CCDS DB by Protein ID:NP_001098660Link to BLAST:NP_001098660.1

Chromosomal Locations for CCDS 52303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 86996465 86996661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87001205 87001484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87001872 87002678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87003386 87003613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87004041 87004164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87037049 87037968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGTTCTCTTTGACTTTTGTCTTCTTGGTTCTGAAGCTTTCCTTTCTTTTTTGCTATTTGAGCGACCCCA
GGTGCTTTTGGAGAATAAAAGACAGAGAAAACTATCTAGGCGATAAAGAGGCTGATTGTTTCTTTTCCAT
GTATACAAAGCATGGTTATGTGAAGAATGATTACTTCAGTGAGAATCTAGACAAGAAGGTGACCCTTAAG
ACCATCCACTTGATTTCCTCTGTTTATTTTGCTGCTGAAGAAATCAATAGGAACAGTTATATTCTACCTA
ACACTTCCCTAATAGTTAAGATTGAATGTAACCTAATTGCGGATAATGTGAAAAGAATTTGGTCCTTGAA
AAAAAAGGAAATTATTCCTAATTACTACTGTAAAAATCAAAGACGATATTTAATTGTACTGACTGGACCT
ATATGGATAACATCTTACATACTTGGACCATTCCTGTACTTCTCCCAAACTCCAGAGCTTTACTGTGGTC
ATTTTCATCTTCTCCTAAATGACCAGGAACAGTTTCCTCATCTCTACCAGATGACTCCCAAGGACACATC
TCTACCACAAGGCATGGTGTCCCTAGCCGTTCACTTCAGATGGAACTGGGTAGGAGTCATCATTACAGAT
GATGACCATGGAATTCAGTTCCTTTCTGAATTGAGAGCAGGAATGGAAAGTAACACTGTCTGCTTAGCAT
TTGTAACTATTATCACATACAATAGGAAGTTATACCTTAAAATGTATCATAAATATTATCACCAAATCAC
AATGTCATCAGCAAAAGTTGTCATTGTCTATGGAGATAAAGAATCTCCTCTACAGTTTAACTTCATACTA
TGGAAATCTGAAAACATTCAGAGACTTTGGGTCAGTGTGTCACAATTTGATATAATCACAATGATAGGTG
AATTCATGCTTAACTCTGTGCATGGAACTCTCATTTTTTCACATCAGCAGTCTGAGATGTCTGGTTTTAA
ACAATTCATGCAGACAGTGCACCCATCTAACTACAGTAATGACATTTCATTGGCTAAACTGTGGTGGACT
TACTTTAAGTGTTCTTTGCCACCACCTGATTGTAAAACACTGAAGAATTGTCCAACCAAAACCCTACTTA
AAAGGTTTTTTGTGCCACCTCTTGGAATGTCTATGAGTGAAACATGTTACAACTTATACAATTCTGTGTA
TGCTGTGGCCCACTCACTTCATGAGATGCTTCTGCAACAAGTAGATACATGCTCAGAGAATGATGGAAAG
GTACTGGAATTTAACTCCTGGAAGATGTTCTCTTTTCTGAAGACCATACAATTTGTAAACCCTGTTGGAG
ACCTAATAAACATGAACCAGAATAGAGAACGGGATACAGAGTATGACATTTTCTATATCATGGATTTCCT
AAAACACGAAGGACTTAAAATGAAAATAGGAAGATTTTCTGGTCATTTTCCAAATGGTCAACAACTGTTT
ATATCTGATGAAATGATAGAGTGGGCTACAGATATCAAACAGACTATAGCCTCCGCATGTAGTGTACCTT
GCAGACCAGGACTCAGAAAATACTTTCAGGAGGGTAAGGCTGTCTGCTGTTTTGATTGTTACCCCTGCCC
AGAAAACGAAATTTCCAACATGACAGACATGGATCAATGTTTGAAGTGTCCAGAGGATGAGTATGCCAAC
ACTGATCAGACTAACTGCCTCAAGAAAGTTGTGACCTTTCTGGATTACAAAGAACCCTTGGGAATGGCTC
TGACTGGATTGGCTGTGCTCTTTTCTTCTCTTACAGTTGTTGTACTCTGTGTCTTCTTGAAACACCGAGA
CACTCCCATAGTCAAGGCCAATAATGAAACTCTCAGCTATGTCCTACTCATCTCCCTCATATTTTGTTTT
ATTTGTTCTTTGCTCTACATTGGTTATCCCAGTATGGTTAGCTGTATCCTGCAACAGACCACATTTGCTA
TGGTGTTCACTGTATCTGCCTCTTGTGTCTTAGCCAAGACAATTACTGTAGTCCTAGCATTTAAGATCAC
TGTTCCAGGAAGAAGACTGAGGTGGCTGCTACTTTCAGGAGCACCTAATTACATCATTCCCATATGCACC
ACAATACAAATGATGCTCTGTGGAATCTGGCTGGGAATTTCTCCTCCATTTGTTGATGCTGATCTACACA
TGGTACATGGACACATCATCATTGTTTGCAACAAAGGTTCAGTGATTGCCTTCTACTGTGTCCTTGGATA
CATGGGCTCTCTTGCTCTTGCAAGTTTCACTGTGGCTTTCCTGGCCAGGAATCTGCCTGACACATTCAAT
GAAGCCAAGCTCCTGACATTCAGCATGCTGGTGTTCTGCAGTGTCTGGATCACCTTCCTCCCTGTCTACC
ACAGCACTAAAGGCAAGGCTATGGTTGCTGTGGAGGTCTTCTGTATCTTGGCCTCCAGTGCAGGAATGCT
TCTTTGCATATTTGTGCCAAAGTGCTACCTTATTTTGTGGAGACCACAAATAAATTCTTTTCATGAGTTT
AGGAAAATGCATGTGAAAAATAAAAATATCAATTGA

Translation (851 aa):
MFSLTFVFLVLKLSFLFCYLSDPRCFWRIKDRENYLGDKEADCFFSMYTKHGYVKNDYFSENLDKKVTLK
TIHLISSVYFAAEEINRNSYILPNTSLIVKIECNLIADNVKRIWSLKKKEIIPNYYCKNQRRYLIVLTGP
IWITSYILGPFLYFSQTPELYCGHFHLLLNDQEQFPHLYQMTPKDTSLPQGMVSLAVHFRWNWVGVIITD
DDHGIQFLSELRAGMESNTVCLAFVTIITYNRKLYLKMYHKYYHQITMSSAKVVIVYGDKESPLQFNFIL
WKSENIQRLWVSVSQFDIITMIGEFMLNSVHGTLIFSHQQSEMSGFKQFMQTVHPSNYSNDISLAKLWWT
YFKCSLPPPDCKTLKNCPTKTLLKRFFVPPLGMSMSETCYNLYNSVYAVAHSLHEMLLQQVDTCSENDGK
VLEFNSWKMFSFLKTIQFVNPVGDLINMNQNRERDTEYDIFYIMDFLKHEGLKMKIGRFSGHFPNGQQLF
ISDEMIEWATDIKQTIASACSVPCRPGLRKYFQEGKAVCCFDCYPCPENEISNMTDMDQCLKCPEDEYAN
TDQTNCLKKVVTFLDYKEPLGMALTGLAVLFSSLTVVVLCVFLKHRDTPIVKANNETLSYVLLISLIFCF
ICSLLYIGYPSMVSCILQQTTFAMVFTVSASCVLAKTITVVLAFKITVPGRRLRWLLLSGAPNYIIPICT
TIQMMLCGIWLGISPPFVDADLHMVHGHIIIVCNKGSVIAFYCVLGYMGSLALASFTVAFLARNLPDTFN
EAKLLTFSMLVFCSVWITFLPVYHSTKGKAMVAVEVFCILASSAGMLLCIFVPKCYLILWRPQINSFHEF
RKMHVKNKNIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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