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Report for CCDS52290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52290.1 Public Mus musculus 7 Vmn2r68 23 108 98 CCDS HistoryNCBI Gene:620697Re-query CCDS DB by CCDS ID:52290.1Re-query CCDS DB by GeneID:620697See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061074.9 ENSMUSP00000129411.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061074.9Link to Ensembl Protein Viewer:ENSMUSP00000129411.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000061074Re-query CCDS DB by Protein ID:ENSMUSP00000129411
Original member Current member NCBI NM_001105181.1 NP_001098651.1 Accepted alive Link to Nucleotide Sequence:NM_001105181.1Link to Protein Sequence:NP_001098651.1Re-query CCDS DB by Nucleotide ID:NM_001105181Re-query CCDS DB by Protein ID:NP_001098651Link to BLAST:NP_001098651.1

Chromosomal Locations for CCDS 52290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 85221518 85222437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85231856 85231979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85232359 85232586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85233259 85234065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85234419 85234698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 85237508 85237704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGTTCTCTTTGATCTCTGTCATCTGGTTTCTGAAGGTTAAACTTATGTTTTGTCATTTGAGTGACCCCA
AATGCTTTTGGAGAATAAAAGATACTGAAAATAATCTAGGAGATACAGAAACTTATTGTTCCTTTTCTAT
TTCCACAAGGCATGGTTATGTGAAGAATGATTATTTCAGTTGGAATCTAGACAAGAAGGTGACACCCAAG
ACCAACCATTTGATTTTCTCTGTTTATCTTGCCTTGGATGAAATAAATATGAACATCCATATTTTACCTA
ACATTTCTATGGTAGCTAATATTGAATGTTTCCTACAAAAAGATGGTGAAAAAACAGGTTTGGCTTTGCA
AAGAAAGGAATTTATTCCTAATTACTACTGCACAGATGAAAGAAGATATTTAATTATATTTACAGCTCCA
ATATGGGCAGTAACTACAAGACTAGGACCACTCATGTTCATGTATAGCATTCCTGAGCTTTACTGCGGTC
ATTTTCATCTTTCTTTGAATGACAATGAACAATTTCCTCATCTTTACCAGATATCTCCCAAGGACACATC
TCTACCACTAGCGATGGTTTCCCTAATGGTTCATTTCAGATGGAACTGGATAGGAGCGATGATTACAAAT
GATGACCATGGAATTCAATTTCTTTCTAAATTGAGAGGAGAAATGCAAAAACACATTGTCTGTTTATCGT
TTGTGATTACTATCCTAACTGAGCATAGCATGGCCCATAAAGAGTTTCAAAGGTATTTTAACAGAATTGT
AATGTCATCAGCAAAAGTTGTGATAGTGTATGGAGACTACACCTCTCCCATAGATCTTGTCCTCCATTTG
TGTAAATCCAAAGGCATTTTTAGAATCTGGGTTAGTGTGTCACAATTTGATATGATCACATATCTAGGAG
ATTTCATGCTATATTCCTCCTCTGGGACATTCATTTTTTCACACCAGAAACCTGAACTATCTGGTTTTCA
ACAATTTATCCAAACAGTACACCCTTCAAATTACAGTAGTGAATTTTCCTTTGCCAAACTATGGTGGACA
TATTTTAGGTGTTCTTTGCCACCATTTAATTGTAAGAAGCTGAAGAATTGTCCAACCAAAATTGTATTTA
AATGGTTATTCATGACACCACTTGGAATGGCCATGAGTGATACATGCTATAACTTATACAATGCTATACA
TGCTGTGGCCCATTCACTCCATGAGATGCTTCTGCAACAAGTAGACACATGGTCAAATAATGCTGGGAAG
GAACTTGAATTTGACACCTGGAAGATGTTTTCTATTCTGAAGACCTTACAATTTGTAAATCCTGCTGGAG
ACCTAGTCAACATGAACCAGAATTTGAAACAGGATACAGAGTATGAAATTTTCTATATCATGGATTTTCA
AAAAGATTATGGACTTAAAATGAAAATAGGAAGATTTTCAGGTCATCTGCCAAGTCGTCAACAGCTATAT
ATGTCTAAGGAAATGATGGAGTGGGCGATAGATGTGGATCAGATTCTTCCCTCAATATGTAGTATGCCTT
GCAGACCAGGACTCAGAAAATCCCCTCAGGAAGAAAAGGATATCTGCTGTTTTGTTTGTAACCCCTGCCT
TGAAAATGAAATTTCCAACATGACAAACATGGATCAGTGTGTGAAGTGTCGAGAAGATCAATATGCAAAT
GAACACCATACTCTCTGCCTCCAAAAAGTTGTGTCTATTTTAGATTATAGAGATCCTTTGGGAAAGGCTC
TAGCTGGCATTGCTCTATGCTTCTCTTTCCTTACATCTGTTGTACTCTGCATCTTCCTGAAACACCGAGA
AACTCCCATAGTCAAAGCCAATAACCAAACGCTCAGCTATGTACTACTCATCTCCCTCGTATTTTGTTTT
ATCTGTTCATTACTTTACATTGGTCATCCCACTGCGGTCATCTGTATCCTTCAGCAGACCACTTTTGTGA
TTGCTTTCACTGTGGCTACCTCTACTATCTTGGCTAAGACAATTACTGTTCTACTAGCATTCAAAATAAC
CATTCCAGGAAGAAGAATGAGGTGGCTGCTTGTGTCAGGGGCACCCAAATATATAATTCTCATATGTACC
ATGATTCAGCTGATTCTTTGTGGAATTTGGCTGGGAACTTCTCCTCCATTTGTTGATGCTGATGCACACA
TGGTACATGGCCACATCATCATTGTTTGCAACAAAGGTTCAGTGATTGCCTTCTACTGTGTCCTTGGATA
CATGGGCTCTGTTGCTCTAGCAAGTTTCACTGTAGCTTTCTTGGCCAGGAATCTGCCTGATACATTCAAT
GAAGCCAAACTCTTGACATTCAGCATGTTGGTGTTCTGCAGTGTCTGGATTACTTTCATCCCTGTCTACC
ACAGCACCAAAGGCAAGACTATGGTTGCTGTGGAAGTTTTTTGTATCTTGGCCTCAAGTGCAGGTCTGCT
TCTTTGCATTTTTGCCCCTAAATGCTACATTATTTTATTAAGACCAGACATAAATTCTTTTCAAAAGTTC
AGGAAACCACATGCAAATGCTGAAAATATAAGTTAA

Translation (851 aa):
MFSLISVIWFLKVKLMFCHLSDPKCFWRIKDTENNLGDTETYCSFSISTRHGYVKNDYFSWNLDKKVTPK
TNHLIFSVYLALDEINMNIHILPNISMVANIECFLQKDGEKTGLALQRKEFIPNYYCTDERRYLIIFTAP
IWAVTTRLGPLMFMYSIPELYCGHFHLSLNDNEQFPHLYQISPKDTSLPLAMVSLMVHFRWNWIGAMITN
DDHGIQFLSKLRGEMQKHIVCLSFVITILTEHSMAHKEFQRYFNRIVMSSAKVVIVYGDYTSPIDLVLHL
CKSKGIFRIWVSVSQFDMITYLGDFMLYSSSGTFIFSHQKPELSGFQQFIQTVHPSNYSSEFSFAKLWWT
YFRCSLPPFNCKKLKNCPTKIVFKWLFMTPLGMAMSDTCYNLYNAIHAVAHSLHEMLLQQVDTWSNNAGK
ELEFDTWKMFSILKTLQFVNPAGDLVNMNQNLKQDTEYEIFYIMDFQKDYGLKMKIGRFSGHLPSRQQLY
MSKEMMEWAIDVDQILPSICSMPCRPGLRKSPQEEKDICCFVCNPCLENEISNMTNMDQCVKCREDQYAN
EHHTLCLQKVVSILDYRDPLGKALAGIALCFSFLTSVVLCIFLKHRETPIVKANNQTLSYVLLISLVFCF
ICSLLYIGHPTAVICILQQTTFVIAFTVATSTILAKTITVLLAFKITIPGRRMRWLLVSGAPKYIILICT
MIQLILCGIWLGTSPPFVDADAHMVHGHIIIVCNKGSVIAFYCVLGYMGSVALASFTVAFLARNLPDTFN
EAKLLTFSMLVFCSVWITFIPVYHSTKGKTMVAVEVFCILASSAGLLLCIFAPKCYIILLRPDINSFQKF
RKPHANAENIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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