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Report for CCDS52285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52285.1 Public Mus musculus 7 Bnc1 23 108 98 CCDS HistoryNCBI Gene:12173Re-query CCDS DB by CCDS ID:52285.1Re-query CCDS DB by GeneID:12173See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026096.9 ENSMUSP00000026096.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026096.9Link to Ensembl Protein Viewer:ENSMUSP00000026096.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026096Re-query CCDS DB by Protein ID:ENSMUSP00000026096
Original member Current member NCBI NM_007562.2 NP_031588.2 Accepted alive Link to Nucleotide Sequence:NM_007562.2Link to Protein Sequence:NP_031588.2Re-query CCDS DB by Nucleotide ID:NM_007562Re-query CCDS DB by Protein ID:NP_031588Link to BLAST:NP_031588.2

Chromosomal Locations for CCDS 52285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81968343 81969027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81973190 81975045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81977209 81977444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81978418 81978517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81992195 81992290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2973 nt):
ATGCGGCGGTCGCCGAGCCGGGGCGGACGCGGAGCGGCCCGGGCAGGGGACGCGCGCCGGGAAGGCCGGC
TCCGCAGCGGCTGCAGGATGGCTGAGGCTATCGGCTGTACTCTGAACTGCAGTTGCCAATGTTTCAAACC
TGGGAAGATAAACCACCGTCAGTGTGAACAGTGCAGGCACGGATGGGTGGCTCATGCTCTGAGTAAGCTG
AGGATCCCCCCTGTGTATCCAACAAGCCAAGTGGAAATTGTCCAGTCCAATGTGGTGTTCGATATTAGCA
GCCTCATGCTCTATGGAACCCAGGCTATCCCTGTTCGCCTGAAAATCCTATTGGACCGGCTCTTCAGTGT
GCTGAAGCAAGATGAGGTTCTACAGATCCTCCATGCCCTGGACTGGACGCTTCAGGATTACATCCGTGGA
TATGTGTTACAGGATGCCTCTGGGAAGGTGCTGGATCACTGGAGCATCATGACCAGTGAGGAGGAAGTGG
CTACCTTGCAGCAGTTCCTTCGCTTTGGAGAGACCAAGTCCATAGTTGAACTCATGGCAATCCAAGAGAA
AGAAGAGCAGTCTGTCATCGTACCGCCCACCACGGCCAATGTAGACATCAGGGCTTTCATCGAGAGCTGC
GGCCACAGGAGTGCCAGCCTCCCTACTCCTGTGGACAAAGGAAGCCCTGGCGGCATGCACCCCTTTGAGA
ACCTTATAAGCAACATGACGTTCATGTTGCCTTTCCAGTTCTTCAACCCTCTGCCTCCTGCTCTGATAGG
GTCGCTGCCTGAACAGTACATGCTGGAGCAGGGGCAGGACCAAAGCCAGGAACCCAAACAGGAGCTCCAT
GGGCCCTTCTCGGACAGCAGCTTCTTAACTTCCACCCCATTTCAGGTTGAAAAAGAACAGTGCCTCAACT
GTCCAGAAACTGTCCCCCAAAAGGAAGACAGTGCTCACTTAAGCGACTCCAGCTCATATAGCATTGCCAG
TAAGCTTGAAAGGACACAGCTGTCCCCTGAGGCCAAGGTGAAGCCTGAGAGGAACAGCCTCAGTGCTAAG
AAGGGCCGGGTGTTCTGCACGGCGTGCGAGAAGACATTCTATGACAAAGGCACTCTGAAGATCCACTACA
ACGCCGTCCACCTAAAGATCAAGCACAAGTGCACGATCGAAGGGTGTAACATGGTGTTCAGCTCCCTGAG
GAGCCGGAACCGACACAGCGCCAACCCCAACCCTCGCCTGCACATGCCAATGAACAGAAACAACAGGGAC
AAAGATCTCAGGAATAGCCTGAACCTGGCAAGCTCTGAGACCTACAAGCGCCCAGGTTTCACAGTGGTGT
CTCCAGACTGTGGGCCCCTCCCTGGCTACACTGGTTCCGTGGAGGACTCCAAAGGCCAACCTGCTTTCTC
AAGCATTGGGCAAAATGGTGTGCTTTTCCCTAATCTAAAGACTGTCCAGCCAGTCCTTCCTTTCTACCGC
AGTCCAGCCACTCCCGCGGAGCTGGCCAACACACCCGGCATGCTGCCTTCCCTCCCTCTGTTGTCCTCTT
CGATCCCAGAACAGCTGGTTTCCACAGACATGCCATTCGATGCTCTTCCCAAGAAGAAATCCCGCAAGTC
CAGTATGCCTATCAAAATAGAGAAAGAAGCTGTGGAAATAGCTGAGGAGAAGAGACACAGTCTCAGCTCA
GACGATGAGGTGCCTCTGCAGGTAGTCAGTGAAGACGAGCCAGAGGACAGCAGTCCTAGGTCAGACAGAG
TACCTGAGGAGCAGCATACACAGCTAAGCTTAGAGGAGCCTCTTCCACAAGGAGAAAGAGCCTGCCATCT
TGAATCTGTGATTGAGTCACATGGAGCTCTCAGCAGAACCCTTGAGCAGACCACGCTCACTGAGAGGGAG
GCTGAACAGAAGGTAGCACTGAGTTCAGTGATGCCAAGAGAGGTGGAGGATGGTGGCCACGAGCGCCATT
TCACAGCTGGCCTGGTACCCCAAATCCCTTTTCCTGACTACATGGAGTTGCAGCAGCGCCTGCTTGCTGG
GGGACTCTTCGGTGCTTTGTCCAACAGGGGGATGGCTTTTCCTTTTCTGGAAGAGTCTAAAGAGCTGGAG
CACCTGGGTGAGCATGCACTAGTGAGGCAGAAGGAAGAAGCTTGCTTCCAGTGTGACATCTGCAAGAAGA
CCTTTAAAAACGCTTGCAGCATGAAGACGCATGAGAAGAACACACACGCCCGAGAGACACACGCGTGCAC
AGTGGAGGGCTGCGGGGCTGCTTTCCCTTCCCGTAGGAGCAGAGACAGACACAGCTCGAACCTAAGCCTC
CACCAGAAAGTACTGAATGAAGAAGCATTGGAGACTAGTGAGGACCATTTTCGTGCAGCTTACCTTCTGC
AAGATGTGGCCAAGGAGGCCTATCAGGATGTGGCTTTCACGCCACAAGCATCACAGACATCTGTCATCTT
CAAGGGAACAAGTGGCATGGGCAGTCTGGTTTACCCAATATCTCAAGTTCACAGTGCCAGCCTGGAGAGC
TACAACTCTGGCCCCCCTAGCGAGGGCACCATCCTGGATTTGAGCACTACCTCAAGTATGAAGTCAGAGA
GCAGCAGTCATTCCTCCTGGGACTCTGATGGCGTGAGTGAGGAAGGCACTGCCCTTATGGAGGACAGTGA
TGGCAACTGTGAAGGACAGAGCCTTGTCTCTGGGGAAGATGAATACCCTCTCTGTGTCCTAATGGAGAAG
GCAGACCAGAGCCTTGCTAGCCTGCCCTCTGGTTTGCCAATAACCTGTCATCTCTGCCAAAAGATATACA
GTAACAAAGGGACCTTTAGAGCCCATTACAAAACCGTGCACCTCCGCCAGCTCCACAAGTGCAAAGTGCC
AGGCTGCAACACGATGTTCTCATCTGTTCGCAGTAGAAACAGACACAGTCAGAATCCCAACCTGCACAAG
AGCCTGGCTTCATCTCCAAGCCACCTCCAGTAA

Translation (990 aa):
MRRSPSRGGRGAARAGDARREGRLRSGCRMAEAIGCTLNCSCQCFKPGKINHRQCEQCRHGWVAHALSKL
RIPPVYPTSQVEIVQSNVVFDISSLMLYGTQAIPVRLKILLDRLFSVLKQDEVLQILHALDWTLQDYIRG
YVLQDASGKVLDHWSIMTSEEEVATLQQFLRFGETKSIVELMAIQEKEEQSVIVPPTTANVDIRAFIESC
GHRSASLPTPVDKGSPGGMHPFENLISNMTFMLPFQFFNPLPPALIGSLPEQYMLEQGQDQSQEPKQELH
GPFSDSSFLTSTPFQVEKEQCLNCPETVPQKEDSAHLSDSSSYSIASKLERTQLSPEAKVKPERNSLSAK
KGRVFCTACEKTFYDKGTLKIHYNAVHLKIKHKCTIEGCNMVFSSLRSRNRHSANPNPRLHMPMNRNNRD
KDLRNSLNLASSETYKRPGFTVVSPDCGPLPGYTGSVEDSKGQPAFSSIGQNGVLFPNLKTVQPVLPFYR
SPATPAELANTPGMLPSLPLLSSSIPEQLVSTDMPFDALPKKKSRKSSMPIKIEKEAVEIAEEKRHSLSS
DDEVPLQVVSEDEPEDSSPRSDRVPEEQHTQLSLEEPLPQGERACHLESVIESHGALSRTLEQTTLTERE
AEQKVALSSVMPREVEDGGHERHFTAGLVPQIPFPDYMELQQRLLAGGLFGALSNRGMAFPFLEESKELE
HLGEHALVRQKEEACFQCDICKKTFKNACSMKTHEKNTHARETHACTVEGCGAAFPSRRSRDRHSSNLSL
HQKVLNEEALETSEDHFRAAYLLQDVAKEAYQDVAFTPQASQTSVIFKGTSGMGSLVYPISQVHSASLES
YNSGPPSEGTILDLSTTSSMKSESSSHSSWDSDGVSEEGTALMEDSDGNCEGQSLVSGEDEYPLCVLMEK
ADQSLASLPSGLPITCHLCQKIYSNKGTFRAHYKTVHLRQLHKCKVPGCNTMFSSVRSRNRHSQNPNLHK
SLASSPSHLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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