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Report for CCDS51973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51973.1 Public Mus musculus 7 Tnnt1 23 108 98 CCDS HistoryNCBI Gene:21955Re-query CCDS DB by CCDS ID:51973.1Re-query CCDS DB by GeneID:21955See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51973.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071798.12 ENSMUSP00000071704.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071798.12Link to Ensembl Protein Viewer:ENSMUSP00000071704.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071798Re-query CCDS DB by Protein ID:ENSMUSP00000071704
Original member Current member NCBI NM_011618.2 NP_035748.1 Accepted alive Link to Nucleotide Sequence:NM_011618.2Link to Protein Sequence:NP_035748.1Re-query CCDS DB by Nucleotide ID:NM_011618Re-query CCDS DB by Protein ID:NP_035748Link to BLAST:NP_035748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035748.1 261 O88346-2 261 100% 0 0

Chromosomal Locations for CCDS 51973.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4504755 4504800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4507383 4507423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4507522 4507612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4508474 4508583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4509011 4509124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4509558 4509635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4509952 4510068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4510317 4510380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4512265 4512283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4513581 4513613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4513811 4513837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4514213 4514226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4514337 4514368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGTCAGACACCGAAGAACAAGAATATGAGGAGGAGCAGGCAGAAGATGAGGAAGCGGTGGAGGAGGAGG
AAGCCCCCGAGGAGCCGGAGCCGGTGGCAGAGCGAGAAGAGCGCCCCAAACCCAGCCGTCCTGTGGTGCC
TCCTTTGATTCCCCCGAAGATTCCAGAAGGGGAGCGTGTGGATTTTGATGACATCCACCGGAAGCGCATG
GAGAAAGACTTACTGGAGCTGCAGACGCTCATCGACGTGCACTTTGAACAGCGGAAAAAGGAGGAGGAAG
AGCTCATTGCACTAAAAGACCGCATTGAGAGGCGACGCGCAGAGAGAGCTGAGCAACAGCGCTTCAGAAC
GGAAAAGGAGCGAGAACGCCAGGCCAAGCTGGCGGAGGAGAAGATGCGGAAGGAGGAGGAGGAGGCAAAG
AAGAGAGCAGAGGATGACGCCAAGAAGAAGAAAGTTCTGTCCAACATGGGAGCTCATTTTGGGGGCTACC
TGGTCAAGGCAGAACAGAAGCGTGGGAAGCGACAGACTGGTCGGGAGATGAAACTCCGGATTCTGTCTGA
GAGGAAAAAGCCCTTGAACATCGACTACATGGGGGAGGACCAGCTCCGGGAAAAGGCCCAGGAGCTGTCA
GAATGGATCCACCAGCTGGAATCAGAAAAATTTGACCTGATGGAGAAGTTGAAGCAACAGAAATATGAGA
TCAATGTGCTCTACAACCGCATCAGCCACGCCCAGAAATTCCGAAAGGGGGCTGGGAAGGGTCGAGTTGG
AGGCCGCTGGAAGTGA

Translation (261 aa):
MSDTEEQEYEEEQAEDEEAVEEEEAPEEPEPVAEREERPKPSRPVVPPLIPPKIPEGERVDFDDIHRKRM
EKDLLELQTLIDVHFEQRKKEEEELIALKDRIERRRAERAEQQRFRTEKERERQAKLAEEKMRKEEEEAK
KRAEDDAKKKKVLSNMGAHFGGYLVKAEQKRGKRQTGREMKLRILSERKKPLNIDYMGEDQLREKAQELS
EWIHQLESEKFDLMEKLKQQKYEINVLYNRISHAQKFRKGAGKGRVGGRWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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