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Report for CCDS51953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51953.1 Public Mus musculus 6 C2cd5 23 108 98 CCDS HistoryNCBI Gene:74741Re-query CCDS DB by CCDS ID:51953.1Re-query CCDS DB by GeneID:74741See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087485.6 ENSMUSP00000084758.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087485.6Link to Ensembl Protein Viewer:ENSMUSP00000084758.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087485Re-query CCDS DB by Protein ID:ENSMUSP00000084758
Original member Current member EBI ENSMUST00000111758.8 ENSMUSP00000107388.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111758.8Link to Ensembl Protein Viewer:ENSMUSP00000107388.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111758Re-query CCDS DB by Protein ID:ENSMUSP00000107388
Original member Current member NCBI NM_001109688.2 NP_001103158.1 Accepted alive Link to Nucleotide Sequence:NM_001109688.2Link to Protein Sequence:NP_001103158.1Re-query CCDS DB by Nucleotide ID:NM_001109688Re-query CCDS DB by Protein ID:NP_001103158Link to BLAST:NP_001103158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103158.1 990 Q7TPS5-2 990 100% 0 0

Chromosomal Locations for CCDS 51953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143012008 143012136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143013202 143013348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143017883 143018073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143029160 143029246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143029573 143029660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143030122 143030211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143030778 143030876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143031245 143031306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143031562 143031625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143035022 143035162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143036235 143036399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143038823 143039009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143041352 143041543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143047043 143047138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143050125 143050239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143061753 143061861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143067056 143067141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143073663 143073787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143078263 143078461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143079869 143080024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143081333 143081428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143083163 143083334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143090599 143090685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143099678 143099767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2973 nt):
ATGCCGGGGAAGCTGAAGGTGAAAATTGTGGCCGGTCGCCATTTGCCGGTGATGGACCGTGCCAGTGACC
TGACGGATGCCTTCGTGGAGGTAAAATTTGGTAATACAACCTTTAAGACAGATGTGTATCTCAAGTCACT
GAATCCTCAGTGGAACTCGGAGTGGTTTAAATTTGAGGTGGACGATGAAGATTTACAGGATGAGCCTCTG
CAGATCACAGTTCTTGACCACGATACTTACAGTGCAAACGATGCTATTGGCAAGGTGTACATTGACATCG
ACCCTTTACTGTACAGTGAAGCTGCCACAGTCATCTCAGGCTGGTTCCCAATTTATGACACCATACATGG
TATCCGCGGAGAAATCAATGTTGTGGTTAAAGTAGACCTCTTCAATGATTCAAACAGGTTCAGACAGTCT
TCATGTGGAGTTAAATTCTTTTGCACAACATCTATTCCAAAGTGCTACAGAGCTGTGGTAATCCACGGAT
TTGTAGAAGAACTTGTGGTCAATGAGGATCCCGAGTATCAGTGGATTGATCGGATCCGCACCCCAAGGGC
ATCGAATGAAGCCAGGCAGAGACTCATCTCCTTGATGTCAGGTGAATTACAGAGAAAGATTGGCTTGAAA
GTCCTCGAGATGAGAGGGAATGCAGTTGTTGGGTACTTGCAGTGCTTTGATCTGGAGGGCGAGTCTGGGT
TAGTGGTCCGAGCCATAGGAACGGCGTGCACTCTGGATAAACTGAGCAGCCCAGCAGCGTTCCTTCCTGC
ATGCAGCTCCCCATCCAGAGAACTGAAGGAGTCTCCGCTGGTTCATCCTCCAAGCCATGGATGCCGCTCG
ACTCACAACAGCCCAATTCACACTGCTACTGGCTCACGACTCACTCAGAACTTCTCTGTGTCTGTTCCCA
CTCTCATCTATACTGGAATGGGCAGTGGGAGTGCTGGAAAAGAAGGGGGGCCCTTTAAAGCCCTTTTACG
GCAACAGACGCAGTCGGCGTTGGAACAGCGGGAGTTCCCGTTCCTCACCCTGACGGCCTTCCCCCCTGGA
CTTCTTGTGCACGTCGGTGGCGTTGTCAGTGCACGCTCTGTGAAGCTTTTAGATCGGATCCACAACCCTG
ATGAACCAGAAACTCGAGATGCATGGTGGGCAGAAATCAGACAAGAGATAAAGTCACATGCTAAAGCCTT
AGGCTGCCATGCTGTAGTGGGCTACAGCGAGTCAACCAGCATCTGTGAAGAAGTCTGTATTTTATCAGCG
TCTGGCACGGCAGCTGTGCTGAACCCTCGGTTTCTGCAGGAAGGCACTGTGGAGGGCTGTTTGGAACAAA
GGATTGAAGAGAATTTACCGGTGGGCTGCGGATTCTGCCATATACCATATGATGAACTGAACATGCCGTT
TCCCGCTCATCTCACATATTGCTATAACTGCAGGAAGCAAAAAGTCCCTGATGTTCTCTTCACAACTATC
GATCTGCCCACAGACGCAGTGGTTGTTGGTAAAGGTTGTCTTATTCAGGCAAGGTTATGTCGATTAAAAA
AGAAAGCACAGGCAGAAGCCAATGCCACAGCTATCAGTAATCTCTTGCCGTTTATGGAATATGAAGTACA
CACTCAACTGATGAACAAGCTCAAACTCAAAGGAATGAATGCTTTGTTTGGACTGAGAATTCAGATCACA
GTGGGCGAGACCATGCTGATGGGCTTAGCGTCGGCCACAGGAGTCTACTTAGCAGCCTTACCCACACCCG
GTGGAATCCAGATCGCTGGGAAGACCCCTAATGATGGCTCCTATGAACAGCACATCTCCCACATGCAGAA
GAGAATAAACGACACCATTGCAAAAAACAAAGAGCTGTATGAGATCACCCCCCCGGAGGTGTCTGAGGAG
ATGATAGGATCCCCCATCCCAGAACCCAGACAGCGCTCCAGACTTCTAAGATCACAGTCGGAAAGTTCTG
ATGAAGTTACAGAGTTAGATCTTTCACACGGGAAAAAGGATGCTTTTGTTTTAGAGATCGATGACACCGA
TGCCATGGAAGATGTGCACTCCCTCCTTACTGACGCCCCGCCCCCTTCAGGTTTTTATAGTTGTAATACA
GAAATTATGCCTGGCATAAATAACTGGACATCAGAAATACAGATGTTCACGTCAGTAAGAGTGGTCAGAC
TAAGTAGCCTCAACTTGACTAACCAAGCTCTCAATAAGAACTTCAACGGCCTATGTGAGAACTTGCTCAA
GAGCCTGTATTTCAAACTTCGGTCCATGACCCCCTGCTGCCTCTGCCATGTGAACTTTACAGTGTCTCTG
CCTGAAGATGAGTTAATCCAGGTCACAGTCACAGCAGTTGCAATAACTTTTGATAAAAACCAGGCCTTAC
AGACCACAAAACCCCACGTTGAAAAGTCACTACAAAGAGCCTCCACAGATAACGAAGAACTGCTGCAGTT
CCCACTGGAGCTCTGCTCAGACTCACTGCCTCCTCATCCTTTCCCAGCAGCTAAAGCTGTGACTGTTGAA
AAAGCAAGTGCCATGGGTGATGGAAATTTCCGGAATCGCTCTGCTCCACCTTGTGCAAGTCCCACAGTTG
GGGTTGTTAAGATGACGCCGCTTTCTTTCATCCCTGGAGCAAAGATAACCAAGTACCTCGGCATCATTAA
CATGTTTTTCATTCGGGAAACCACTTCTCTCCGCGAGGAAGGCGGAGTCAGTGGTTTTCTCCACGCTTTC
ATTGCTGAAGTGTTTGCCATGGTCCGAGCTCACGTGGCAGCGCTGGGCGGGAATGCTGTTGTGTCCTACA
TCATGAAGCAGTGTGTCTTCATGGAGAACCCCAGTAAGAACCAGGCACAGTGTCTCATAAATGTCAGTGG
GGACGCGGTGGTGTTTGTTCGTGACTCCGACTTAGAGGTCATGTCATCTCAGCAGCCTGCTGCCAACTGC
CAGCCCTCATGTACCGGAGAAGTTACAACTTGA

Translation (990 aa):
MPGKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYLKSLNPQWNSEWFKFEVDDEDLQDEPL
QITVLDHDTYSANDAIGKVYIDIDPLLYSEAATVISGWFPIYDTIHGIRGEINVVVKVDLFNDSNRFRQS
SCGVKFFCTTSIPKCYRAVVIHGFVEELVVNEDPEYQWIDRIRTPRASNEARQRLISLMSGELQRKIGLK
VLEMRGNAVVGYLQCFDLEGESGLVVRAIGTACTLDKLSSPAAFLPACSSPSRELKESPLVHPPSHGCRS
THNSPIHTATGSRLTQNFSVSVPTLIYTGMGSGSAGKEGGPFKALLRQQTQSALEQREFPFLTLTAFPPG
LLVHVGGVVSARSVKLLDRIHNPDEPETRDAWWAEIRQEIKSHAKALGCHAVVGYSESTSICEEVCILSA
SGTAAVLNPRFLQEGTVEGCLEQRIEENLPVGCGFCHIPYDELNMPFPAHLTYCYNCRKQKVPDVLFTTI
DLPTDAVVVGKGCLIQARLCRLKKKAQAEANATAISNLLPFMEYEVHTQLMNKLKLKGMNALFGLRIQIT
VGETMLMGLASATGVYLAALPTPGGIQIAGKTPNDGSYEQHISHMQKRINDTIAKNKELYEITPPEVSEE
MIGSPIPEPRQRSRLLRSQSESSDEVTELDLSHGKKDAFVLEIDDTDAMEDVHSLLTDAPPPSGFYSCNT
EIMPGINNWTSEIQMFTSVRVVRLSSLNLTNQALNKNFNGLCENLLKSLYFKLRSMTPCCLCHVNFTVSL
PEDELIQVTVTAVAITFDKNQALQTTKPHVEKSLQRASTDNEELLQFPLELCSDSLPPHPFPAAKAVTVE
KASAMGDGNFRNRSAPPCASPTVGVVKMTPLSFIPGAKITKYLGIINMFFIRETTSLREEGGVSGFLHAF
IAEVFAMVRAHVAALGGNAVVSYIMKQCVFMENPSKNQAQCLINVSGDAVVFVRDSDLEVMSSQQPAANC
QPSCTGEVTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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