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Report for CCDS51952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51952.1 Public Mus musculus 6 C2cd5 23 108 98 CCDS HistoryNCBI Gene:74741Re-query CCDS DB by CCDS ID:51952.1Re-query CCDS DB by GeneID:74741See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203187.2 ENSMUSP00000145373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203187.2Link to Ensembl Protein Viewer:ENSMUSP00000145373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203187Re-query CCDS DB by Protein ID:ENSMUSP00000145373
Original member Current member NCBI NM_029081.3 NP_083357.2 Accepted alive Link to Nucleotide Sequence:NM_029081.3Link to Protein Sequence:NP_083357.2Re-query CCDS DB by Nucleotide ID:NM_029081Re-query CCDS DB by Protein ID:NP_083357Link to BLAST:NP_083357.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083357.2 1016 Q7TPS5-1 1016 100% 0 0

Chromosomal Locations for CCDS 51952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143012008 143012136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143013202 143013348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143017883 143018073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143020324 143020374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143029160 143029246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143029573 143029660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143030122 143030211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143030778 143030876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143031245 143031306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143031562 143031625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143035022 143035162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143036235 143036399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143038823 143039009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143041352 143041543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143047043 143047138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143050125 143050239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143061753 143061861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143067056 143067141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143072543 143072694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143078263 143078461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143079869 143080024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143081333 143081428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143083163 143083334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143090599 143090685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143099678 143099767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3051 nt):
ATGCCGGGGAAGCTGAAGGTGAAAATTGTGGCCGGTCGCCATTTGCCGGTGATGGACCGTGCCAGTGACC
TGACGGATGCCTTCGTGGAGGTAAAATTTGGTAATACAACCTTTAAGACAGATGTGTATCTCAAGTCACT
GAATCCTCAGTGGAACTCGGAGTGGTTTAAATTTGAGGTGGACGATGAAGATTTACAGGATGAGCCTCTG
CAGATCACAGTTCTTGACCACGATACTTACAGTGCAAACGATGCTATTGGCAAGGTGTACATTGACATCG
ACCCTTTACTGTACAGTGAAGCTGCCACAGTCATCTCAGGCTGGTTCCCAATTTATGACACCATACATGG
TATCCGCGGAGAAATCAATGTTGTGGTTAAAGTAGACCTCTTCAATGATTCAAACAGGTTCAGACAGTCT
TCATGTGGAGTTAAATTCTTTTGCACAACATCTATTCCAAAGTGCTACAGAGCTGTGGTAATCCACGGAT
TTGTAGAAGAACTTGTGGTCAATGAGGATCCCGAGTATCAGTGGATTGATCGGATCCGCACCCCAAGGGC
ATCGAATGAAGCCAGGCAGAGACTCATCTCCTTGATGTCAGGTGAATTACAGAGAAAGATTGGCTTGAAA
GTCCTCGAGATGAGAGGGAATGCAGTTGTTGGGTACTTGCAGTGCTTTGATCTGGAGGGCGAGTCTGGGT
TAGTGGTCCGAGCCATAGGAACGGCGTGCACTCTGGATAAACTGAGCAGCCCAGCAGCGTTCCTTCCTGC
ATGCAGCTCCCCATCCAGAGAACTGAAGGAGATTCCCTTCAATGAGGATCCCAACCCCAATACTCACTCA
TCAGGACCCTCAACCCCTCTGAAAAACCAAACTTATTCCTTTTCACCTTCCAAGTCCTACAGTCGGCAGT
CCTCTTCTTCTGACACAGATTTGAGTTTGACACCCAAGACTGGAATGGGCAGTGGGAGTGCTGGAAAAGA
AGGGGGGCCCTTTAAAGCCCTTTTACGGCAACAGACGCAGTCGGCGTTGGAACAGCGGGAGTTCCCGTTC
CTCACCCTGACGGCCTTCCCCCCTGGACTTCTTGTGCACGTCGGTGGCGTTGTCAGTGCACGCTCTGTGA
AGCTTTTAGATCGGATCCACAACCCTGATGAACCAGAAACTCGAGATGCATGGTGGGCAGAAATCAGACA
AGAGATAAAGTCACATGCTAAAGCCTTAGGCTGCCATGCTGTAGTGGGCTACAGCGAGTCAACCAGCATC
TGTGAAGAAGTCTGTATTTTATCAGCGTCTGGCACGGCAGCTGTGCTGAACCCTCGGTTTCTGCAGGAAG
GCACTGTGGAGGGCTGTTTGGAACAAAGGATTGAAGAGAATTTACCGGTGGGCTGCGGATTCTGCCATAT
ACCATATGATGAACTGAACATGCCGTTTCCCGCTCATCTCACATATTGCTATAACTGCAGGAAGCAAAAA
GTCCCTGATGTTCTCTTCACAACTATCGATCTGCCCACAGACGCAGTGGTTGTTGGTAAAGGTTGTCTTA
TTCAGGCAAGGTTATGTCGATTAAAAAAGAAAGCACAGGCAGAAGCCAATGCCACAGCTATCAGTAATCT
CTTGCCGTTTATGGAATATGAAGTACACACTCAACTGATGAACAAGCTCAAACTCAAAGGAATGAATGCT
TTGTTTGGACTGAGAATTCAGATCACAGTGGGCGAGACCATGCTGATGGGCTTAGCGTCGGCCACAGGAG
TCTACTTAGCAGCCTTACCCACACCCGGTGGAATCCAGATCGCTGGGAAGACCCCTAATGATGGCTCCTA
TGAACAGCACATCTCCCACATGCAGAAGAGAATAAACGACACCATTGCAAAAAACAAAGAGCTGTATGAG
ATCACCCCCCCGGAGGTGTCTGAGGAGATGATAGGATCCCCCATCCCAGAACCCAGACAGCGCTCCAGAC
TTCTAAGATCACAGTCGGAAAGTTCTGATGAAGTTACAGAGTTAGATCTTTCACACGGGAAAAAGGATGC
TTTTGTTTTAGAGATCGATGACACCGATGCCATGGAAGATGTGCACTCCCTCCTTACTGACGCCCCGCCC
CCTTCAGGTTTTTATAGTTGTAATACAGAAATTATGCCTGGCATAAATAACTGGACATCAGAAATACAGA
TGTTCACGTCAGTAAGAGTGGTCAGACTAAGTAGCCTCAACTTGACTAACCAAGCTCTCAATAAGAACTT
CAACGGCCTATGTGAGAACTTGCTCAAGAGCCTGTATTTCAAACTTCGGTCCATGACCCCCTGCTGCCTC
TGCCATGTGAACTTTACAGTGTCTCTGCCTGAAGATGAGTTAATCCAGGTCACAGTCACAGCAGTTGCAA
TAACTTTTGATAAAAACCAGGCCTTACAGACCACAAAACCCCACGTTGAAAAGTCACTACAAAGAGCCTC
CACAGATAACGAAGAACTGCTGCAGTTCCCACTGGAGCTCTGCTCAGACTCACTGCCTCCTCATCCTTTC
CCAGCAGCTAAAGAACACCTGGAGAGTGCGAACTCTAACTCAGGTATACCAGCTGCACAGAGAGCTGTGA
CTGTTGAAAAAGCAAGTGCCATGGGTGATGGAAATTTCCGGAATCGCTCTGCTCCACCTTGTGCAAGTCC
CACAGTTGGGGTTGTTAAGATGACGCCGCTTTCTTTCATCCCTGGAGCAAAGATAACCAAGTACCTCGGC
ATCATTAACATGTTTTTCATTCGGGAAACCACTTCTCTCCGCGAGGAAGGCGGAGTCAGTGGTTTTCTCC
ACGCTTTCATTGCTGAAGTGTTTGCCATGGTCCGAGCTCACGTGGCAGCGCTGGGCGGGAATGCTGTTGT
GTCCTACATCATGAAGCAGTGTGTCTTCATGGAGAACCCCAGTAAGAACCAGGCACAGTGTCTCATAAAT
GTCAGTGGGGACGCGGTGGTGTTTGTTCGTGACTCCGACTTAGAGGTCATGTCATCTCAGCAGCCTGCTG
CCAACTGCCAGCCCTCATGTACCGGAGAAGTTACAACTTGA

Translation (1016 aa):
MPGKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYLKSLNPQWNSEWFKFEVDDEDLQDEPL
QITVLDHDTYSANDAIGKVYIDIDPLLYSEAATVISGWFPIYDTIHGIRGEINVVVKVDLFNDSNRFRQS
SCGVKFFCTTSIPKCYRAVVIHGFVEELVVNEDPEYQWIDRIRTPRASNEARQRLISLMSGELQRKIGLK
VLEMRGNAVVGYLQCFDLEGESGLVVRAIGTACTLDKLSSPAAFLPACSSPSRELKEIPFNEDPNPNTHS
SGPSTPLKNQTYSFSPSKSYSRQSSSSDTDLSLTPKTGMGSGSAGKEGGPFKALLRQQTQSALEQREFPF
LTLTAFPPGLLVHVGGVVSARSVKLLDRIHNPDEPETRDAWWAEIRQEIKSHAKALGCHAVVGYSESTSI
CEEVCILSASGTAAVLNPRFLQEGTVEGCLEQRIEENLPVGCGFCHIPYDELNMPFPAHLTYCYNCRKQK
VPDVLFTTIDLPTDAVVVGKGCLIQARLCRLKKKAQAEANATAISNLLPFMEYEVHTQLMNKLKLKGMNA
LFGLRIQITVGETMLMGLASATGVYLAALPTPGGIQIAGKTPNDGSYEQHISHMQKRINDTIAKNKELYE
ITPPEVSEEMIGSPIPEPRQRSRLLRSQSESSDEVTELDLSHGKKDAFVLEIDDTDAMEDVHSLLTDAPP
PSGFYSCNTEIMPGINNWTSEIQMFTSVRVVRLSSLNLTNQALNKNFNGLCENLLKSLYFKLRSMTPCCL
CHVNFTVSLPEDELIQVTVTAVAITFDKNQALQTTKPHVEKSLQRASTDNEELLQFPLELCSDSLPPHPF
PAAKEHLESANSNSGIPAAQRAVTVEKASAMGDGNFRNRSAPPCASPTVGVVKMTPLSFIPGAKITKYLG
IINMFFIRETTSLREEGGVSGFLHAFIAEVFAMVRAHVAALGGNAVVSYIMKQCVFMENPSKNQAQCLIN
VSGDAVVFVRDSDLEVMSSQQPAANCQPSCTGEVTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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