NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51928.1 Public Mus musculus 6 Klra7 23 108 98 CCDS HistoryNCBI Gene:16638Re-query CCDS DB by CCDS ID:51928.1Re-query CCDS DB by GeneID:16638See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032286.6 ENSMUSP00000032286.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032286.6Link to Ensembl Protein Viewer:ENSMUSP00000032286.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032286Re-query CCDS DB by Protein ID:ENSMUSP00000032286
Original member Current member EBI ENSMUST00000112013.7 ENSMUSP00000107644.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112013.7Link to Ensembl Protein Viewer:ENSMUSP00000107644.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112013Re-query CCDS DB by Protein ID:ENSMUSP00000107644
Original member Current member NCBI NM_001110323.1 NP_001103793.1 Accepted alive Link to Nucleotide Sequence:NM_001110323.1Link to Protein Sequence:NP_001103793.1Re-query CCDS DB by Nucleotide ID:NM_001110323Re-query CCDS DB by Protein ID:NP_001103793Link to BLAST:NP_001103793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103793.1 280 Q60654-1 280 99.6429% 0 1

Chromosomal Locations for CCDS 51928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130218900 130219035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130224085 130224188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130226439 130226581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130227095 130227133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130228515 130228733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130229935 130230024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130231506 130231617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGAGTGAGCAGGAGGTCACTTACTCAACTGTGAGATTTCATGAGTCTTCAAGGTTGCAGAAACTAGTGA
GGACTGAGGAGCCTCAAAGGCCCAGAGAAGCTTGCTACAGAGAGTATTCAGTCCCCTGGAAGCTCATTGT
GATAGCTTGTGGAATCCTCTGTTTCCTTCTCCTGGTAACTGTTGCATTGTTGGCAATAACGATTTTTCAG
CATAGTCAACAAAAACATGAACTACAGGAAACTCTAAATTGCCACGATAACTGCAGCCCCACGCAAAGTG
ACGTCAACTTGAAGGATGAACTGCTGAGAAATAAGTCTATAGAGTGTAGGCCAGGCAATGATCTTCTGGA
ATCCCTCAGCAGGGATCAGAACAGATGGTACAGTGAAACCAAGACTTTTTCAGATTCCTCACAGCACACA
GGTGTTCACAAAAGACCCATCTCCAAGGCAGAGGGGAAGGGTAGAGGTTTTGAAAAATATTGGTTCTGTT
ATGGTATAAAATGTTATTATTTCAACATGGACAGAAAAACGTGGAGTGGATGTAAACAGACCTGCCAGAT
TTCCAGCTTATCCCTTCTGAAGATAGACAATGAGGATGAACTGAAGTTCCTTCAGAACCTGGCTCCTTCA
GACATTTCCTGGATTGGATTGTCATATGACAATAAGAAAAAAGATTGGGTATGGATTGACAATGGCCCAT
CTAAACTTGCCTTGAACACAACGAAATATAATATAAGAGATGGATTATGTATGTCGTTATCTAAAACAAG
ACTAGACAATGGGGACTGTGATAAATCATACATCTGTATTTGTGGTAAGAGACTGGATAAATTTCCTCAT
TGA

Translation (280 aa):
MSEQEVTYSTVRFHESSRLQKLVRTEEPQRPREACYREYSVPWKLIVIACGILCFLLLVTVALLAITIFQ
HSQQKHELQETLNCHDNCSPTQSDVNLKDELLRNKSIECRPGNDLLESLSRDQNRWYSETKTFSDSSQHT
GVHKRPISKAEGKGRGFEKYWFCYGIKCYYFNMDRKTWSGCKQTCQISSLSLLKIDNEDELKFLQNLAPS
DISWIGLSYDNKKKDWVWIDNGPSKLALNTTKYNIRDGLCMSLSKTRLDNGDCDKSYICICGKRLDKFPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH