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Report for CCDS51780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51780.1 Public Mus musculus 6 Wipf3 23 108 98 CCDS HistoryNCBI Gene:330319Re-query CCDS DB by CCDS ID:51780.1Re-query CCDS DB by GeneID:330319See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126637.7 ENSMUSP00000116325.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126637.7Link to Ensembl Protein Viewer:ENSMUSP00000116325.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126637Re-query CCDS DB by Protein ID:ENSMUSP00000116325
Original member Current member EBI ENSMUST00000163746.7 ENSMUSP00000132022.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163746.7Link to Ensembl Protein Viewer:ENSMUSP00000132022.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163746Re-query CCDS DB by Protein ID:ENSMUSP00000132022
Original member Current member NCBI NM_001167861.2 NP_001161333.1 Accepted alive Link to Nucleotide Sequence:NM_001167861.2Link to Protein Sequence:NP_001161333.1Re-query CCDS DB by Nucleotide ID:NM_001167861Re-query CCDS DB by Protein ID:NP_001161333Link to BLAST:NP_001161333.1

Chromosomal Locations for CCDS 51780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54452883 54453005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54481785 54481917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54483825 54483959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54485198 54485932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54487908 54488030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54496480 54496556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54500993 54501016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGCCGGTGCCACCGCCACCACCGCCACCACCTCCACCTCCACCTCCACCCCCTCCACCACTAGGGGCTC
CACCCCCTCCACCACTTGGGGCGCCACCCCCTCCACCCCCACCAGGGCCTCCGGTCAGCACAGACACCCC
CAGCTTAAGGAAGCCAGATCTGAAAGGCCGGAGTGCACTGTTGGCTGATATCCAGCAAGGAACACGCCTG
CGGAAAGTCACCCAGATCAATGACCGCAGTGCCCCACAGATCGAGGGTTCAAAAGGAACCAGCAAAGAGG
GAGGAGCTGCTGGCAGCAATGCCAGGGGAGGAAACACACCCCCTGCCCTGGGAGATCTCTTTGCTGGTGG
CTTTCCTGTGTTGAGACCGGCAGGCCAGAGAGATGTGTCAGGTGGCAAGTCCGGGCAGGGCCCTGGCTCC
CGAGCACCTTCTCCCCGGCTCCCTATCAAAGCCATCAGCGGCCCGCTTCCCGCTCCTGCATCTCCCAGGC
TAGGCAATGCCTCAGAGACGCACAGCTCTGCCAGGCCTGTCCCTCCTCGCCCCAGTGTGCCTGCCCCACC
ACCTCCCACTCCACCCCCACCCCCACCTCCGCCCCTCCCCCCAGCCTCCCCCATCAAAGCCCAGTTGGTG
TCCCCGCCTGCCCCTCCAACCAAGGTGAATCCATCTGTGGTGCCACCTCCTCTACCCTGCGCACCTCCTC
TTCCGCCCCCTCCCCCGACTCCGCCCCCGCTGCCCCCAGCCTCGGCGCTGAGCGACAAGGCAGTGAGGCC
CCAACTAGCCCCACTGCACCTGCCACCCATCCCACCCCCGCTCCCTCTCCTTCCACCCTGTGGGTACCCC
GGGCTCCACTCAGAGCCCAACAGCCCTGCACAGGAGGTGCGAGAACCTCCAGCTCCGCCACCGCCACCAC
CCCCACCTCCGCCACCACCGCTCCCCACCTATGCCTCTTGCTCCTCGAGGACCGCTGTGGCCCCGCCCCC
TTTGCCAGGCGCAAACAACAGCGGCAGCGAGACTCCTCCCCCGTTGCCCCCCAAGTCCCCCAGCTTCCAG
ACGCAGAAGGCCTTGCCCACACCTCCAGGTGCTCCCGGCCCTCAGGCTATCCTGCAGAAGAAGCGGCGAG
GCCCAGGAACCAGTGGGGGAAAGCTAAACCCACCTCCAGCCCCACCTGCAAGATCGCCCACCACAGAGCT
TTCCAGCAAAAGCCAGCAGCCTGGAGGCCAGCTGCGGAATGGAGGCCAGCACGCGATTGGCCGCACACCT
GGTTCCTGGCTCCAAGCTGAGGCGGCTGGGCAGAGCTCTGATGACATCAAAAGCAGAAACTCTCAGTTAT
CTCTGAAGGCACTCCGGTGA

Translation (449 aa):
MPVPPPPPPPPPPPPPPPPPLGAPPPPPLGAPPPPPPPGPPVSTDTPSLRKPDLKGRSALLADIQQGTRL
RKVTQINDRSAPQIEGSKGTSKEGGAAGSNARGGNTPPALGDLFAGGFPVLRPAGQRDVSGGKSGQGPGS
RAPSPRLPIKAISGPLPAPASPRLGNASETHSSARPVPPRPSVPAPPPPTPPPPPPPPLPPASPIKAQLV
SPPAPPTKVNPSVVPPPLPCAPPLPPPPPTPPPLPPASALSDKAVRPQLAPLHLPPIPPPLPLLPPCGYP
GLHSEPNSPAQEVREPPAPPPPPPPPPPPPLPTYASCSSRTAVAPPPLPGANNSGSETPPPLPPKSPSFQ
TQKALPTPPGAPGPQAILQKKRRGPGTSGGKLNPPPAPPARSPTTELSSKSQQPGGQLRNGGQHAIGRTP
GSWLQAEAAGQSSDDIKSRNSQLSLKALR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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