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Report for CCDS51745.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51745.1 Public Mus musculus 6 Lrguk 23 108 98 CCDS HistoryNCBI Gene:74354Re-query CCDS DB by CCDS ID:51745.1Re-query CCDS DB by GeneID:74354See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51745.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070189.9 ENSMUSP00000065146.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070189.9Link to Ensembl Protein Viewer:ENSMUSP00000065146.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070189Re-query CCDS DB by Protein ID:ENSMUSP00000065146
Original member NCBI NM_028886.1 NP_083162.1 Updated not alive Link to Nucleotide Sequence:NM_028886.1Link to Protein Sequence:NP_083162.1Re-query CCDS DB by Nucleotide ID:NM_028886Re-query CCDS DB by Protein ID:NP_083162
Current member NCBI NM_028886.2 NP_083162.1 Accepted alive Link to Nucleotide Sequence:NM_028886.2Link to Protein Sequence:NP_083162.1Re-query CCDS DB by Nucleotide ID:NM_028886Re-query CCDS DB by Protein ID:NP_083162Link to BLAST:NP_083162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083162.1 820 Q9D5S7 820 100% 0 0

Chromosomal Locations for CCDS 51745.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34029457 34029753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34036501 34036608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34039308 34039389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34043405 34043505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34048859 34048940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34056071 34056195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34062351 34062494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34071061 34071141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34072370 34072456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34073716 34073822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34078664 34078783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34086376 34086472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34090172 34090285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34092737 34092938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34095524 34095619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34116389 34116519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34127177 34127265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34129105 34129230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34131965 34132110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34133321 34133448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGGCGGCCTTCGAGCGAAATCCCTCGAGATGGAAAGGCACCCGTTTCAGGCGGGGTTTGGGCGCCTCTC
GCATTGCAGCCCAGGCGATACTGTCGCTCACAGAAAAACAAAGTCAGGGCCGTTGGCCTTCTTTCCCCCT
GGGTCTGAAGTCAAAAGGGACTTTCAGAAGCGCCTCCTCTTACCTCCTCCACCAGCTCATCCACCGCTCT
CATGAGGCAGAAGCGGAGCAAGAAGAGAAGCAACAGGAGGACGGAGAATCTGAAGAGTCAGAGGAGTCCG
AAATGCAGAATTTGGAGGACAAGTATGACGGGATCCTGAGAGAGGAGACCGTGGCTGAGGCAATCACTGG
ATTGGGGTGGTCAGGCCGTGGCACGGAGCAGGTTTACCTCAACCTGAATCTATCGCACTGTGAGTTGGTC
GACATCAGCATTCTGTGTGGCTATGTCCACCTGCAGAAGTTGAATCTTTCGGGAAACAGAATCGAAGATT
TGTCTTGTGTGAGCTGCATGCCGTATCTTCTAGAACTAAATGCTTCTCAGAACAAGCTGACTACCTTCTT
CAATTTCAAACCACCCCAAAATCTCAAGAAGGTGGATTTTTCCTCCAACCTGATTTCCGAGATGTATGAC
CTGTCAGCGTACCATACTCTCACTCAACTAATTTTGGACAACAACGAGATAGAAGAAATCACTGGGCTAG
AGAACTGCATCAGCCTGACCCACCTTAGTCTGGCTGGCAACAAGATCACTACCATCAAAGGCTTAGGGAC
ATTACCCATCAAAGTGCTTTCTTTGAGTAACAACATGATTGAGACCATCACAGGTCTGGAGGAGCTGAAA
GCCTTGCAGAACCTGGACCTGTCCCACAATCAGATCAGCAGCCTCCAGGGCTTGGAGAACCATGACCTCC
TGGAAGTGATTAACCTGGAGGATAACAAGATTAAGGAGCTGAGTGAAATAGAATACATTGAAAATCTTCC
TATCCTTCGAGTTCTCAATCTACTAAGGAATCCAATTCAGACCAAGCCCGAGTACTGGTTCTTCGTGATA
TATATGCTGCTGCGACTGACAGAGTTAGACCAGCAGAAGATTAAGGTAGAAGAAAAGGTTTTTGCAGTGA
ATAAGTATGACCCTCCCCCTGAGGTGGTCGCTGTCCAAGATCACATGACCCATGTTGTCAACAGCATGTC
GCAGCCACAGAGGATCTGGGACAGCACCCTGCCGAGTCTGGATGCCCCGTATCCCATGCTCATACTAACT
GGGCCTGCAGCTTGCGGGAAACGAGAACTCGCCCACCGCCTCTGCAGACAGTTTAGTACTTACTTCAGAT
ATGGGGCCTGTCACACCACGAGACCGCCTTACTTTGGTGAAGGAGATCGAGTTGATTATCATTTCATTTC
CCAAGAAGTTTTTGACGAAATGCTGAACATGGGGAAATTTATTTTAACATTTAATTATGGCAATCACAAT
TATGGATTAAATAGGGACACGATAGAAGGTATTGCAAGAGATGGATTAGCAAGCTGCATTCATATGGAAT
TAGAAGGTGTAAGAAGTTTGAAATATTCTTATTTTGAGCCTCGATATATCTTGGTGGTGCCTATGGACAA
GGAAAAATATGAGGGATACTTGCGGAGAAAGGGATTGTTCAGTCGCGCAGAAATCGAAATTGCCGTCTCC
AGGGTGGACCTTTATGTTAAAGTTAATCAGAAATACCCAGGATATTTTGATGCAGTAATCAATGCAGATG
ACATGGACATTGCCTACCAAAAGCTCAGCGAGCTCATTAGAGAATACCTGGGGTTGACTGAGACAGCTGC
TAAGACCTTGGCTCCAACTGCAGATACTAAGACGTCTTACCTGAAATGCGAAGACTATTCTAGGAAGTCC
AGTACAGTTGAATTCTTGGATTCAACAGACAGAAACTACTTTACCAAATTATGGGCCAAACTTTCATCCA
AAAAGTCACCAGTGGAAAGAGAGTCTCTCCACAGACAGCATGAGGCAGCCCGGCAGGCGCTCATGGGGAA
GACGCCCCGTGATCACACGCTCCTGTTTCAAAGGGGTCCAGTACCGATACCTACTGTCAGTGGCCAACAG
TATTTTGCAACAATAGATGAACTACAGAAAACGTTTGAGCTCTCTGACGATCTCTTTAAAACCCCCTCTG
GAACATACCCTGAAACAAGCAAGGATTCCAATATTTCTAAGAGATATTCTACATACTTTCATACTTGTCC
ATGGTCCAAAGAACTTCCCTTTCAGCTTCCAGAGGGTGGGATCTCATCGCGCCCAGGGTCAGCAGGGAGT
GACGAAGTCGATGGGGCATTGAAAGCTCTTCGTGTAGCATCATCTATGCAGGAAAAAGTGGCCCAGCACA
AAAGACTGTCTGCGATTACAATAATGGACCCGGGTTCCAACACCAAACCCACCCTTCCTCCGATCCCGCA
CGGCCGCAGATAG

Translation (820 aa):
MAAFERNPSRWKGTRFRRGLGASRIAAQAILSLTEKQSQGRWPSFPLGLKSKGTFRSASSYLLHQLIHRS
HEAEAEQEEKQQEDGESEESEESEMQNLEDKYDGILREETVAEAITGLGWSGRGTEQVYLNLNLSHCELV
DISILCGYVHLQKLNLSGNRIEDLSCVSCMPYLLELNASQNKLTTFFNFKPPQNLKKVDFSSNLISEMYD
LSAYHTLTQLILDNNEIEEITGLENCISLTHLSLAGNKITTIKGLGTLPIKVLSLSNNMIETITGLEELK
ALQNLDLSHNQISSLQGLENHDLLEVINLEDNKIKELSEIEYIENLPILRVLNLLRNPIQTKPEYWFFVI
YMLLRLTELDQQKIKVEEKVFAVNKYDPPPEVVAVQDHMTHVVNSMSQPQRIWDSTLPSLDAPYPMLILT
GPAACGKRELAHRLCRQFSTYFRYGACHTTRPPYFGEGDRVDYHFISQEVFDEMLNMGKFILTFNYGNHN
YGLNRDTIEGIARDGLASCIHMELEGVRSLKYSYFEPRYILVVPMDKEKYEGYLRRKGLFSRAEIEIAVS
RVDLYVKVNQKYPGYFDAVINADDMDIAYQKLSELIREYLGLTETAAKTLAPTADTKTSYLKCEDYSRKS
STVEFLDSTDRNYFTKLWAKLSSKKSPVERESLHRQHEAARQALMGKTPRDHTLLFQRGPVPIPTVSGQQ
YFATIDELQKTFELSDDLFKTPSGTYPETSKDSNISKRYSTYFHTCPWSKELPFQLPEGGISSRPGSAGS
DEVDGALKALRVASSMQEKVAQHKRLSAITIMDPGSNTKPTLPPIPHGRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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