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Report for CCDS5159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5159.1 Public Homo sapiens 6 VNN1 24 110 108 CCDS HistoryNCBI Gene:8876Re-query CCDS DB by CCDS ID:5159.1Re-query CCDS DB by GeneID:8876See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367928.5 ENSP00000356905.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367928.5Link to Ensembl Protein Viewer:ENSP00000356905.4Re-query CCDS DB by Nucleotide ID:ENST00000367928Re-query CCDS DB by Protein ID:ENSP00000356905
Original member Current member NCBI NM_004666.3 NP_004657.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004666.3Link to Protein Sequence:NP_004657.2Re-query CCDS DB by Nucleotide ID:NM_004666Re-query CCDS DB by Protein ID:NP_004657Link to BLAST:NP_004657.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004657.2 513 O95497 513 100% 0 0

Chromosomal Locations for CCDS 5159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132683140 132683322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132684335 132684505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132692223 132692584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132693024 132693315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132693990 132694182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132711709 132711839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132713826 132714035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGACTACTCAGTTGCCAGCTTACGTGGCAATTTTGCTTTTCTATGTCTCAAGAGCCAGCTGCCAGGACA
CT
TTCACTGCAGCTGTTTATGAGCATGCAGCGATATTGCCCAATGCCACCCTAACACCAGTGTCTCGTGA
G
GAGGCTTTGGCATTAATGAATCGGAATCTGGACATTTTGGAAGGAGCGATCACATCAGCAGCAGATCAG
GGT
GCGCATATTATTGTGACTCCAGAAGATGCTATTTATGGCTGGAACTTCAACAGGGACTCTCTCTACC
CA
TATTTGGAGGACATCCCAGACCCTGAAGTAAACTGGATCCCCTGTAATAATCGTAACAGATTTGGCCA
G
ACCCCAGTACAAGAAAGACTCAGCTGCCTGGCCAAGAACAACTCTATCTATGTTGTGGCAAATATTGGG
GAC
AAGAAGCCATGCGATACCAGTGATCCTCAGTGTCCCCCTGATGGCCGTTACCAATACAACACTGATG
TG
GTATTTGATTCTCAAGGAAAACTGGTGGCACGCTACCATAAGCAAAACCTTTTCATGGGTGAAAATCA
A
TTCAATGTACCCAAGGAGCCTGAGATTGTGACTTTCAATACCACCTTTGGAAGTTTTGGCATTTTCACA
TGC
TTTGATATACTCTTCCATGATCCTGCTGTTACCTTGGTGAAAGATTTCCACGTGGACACCATAGTAT
TC
CCAACAGCTTGGATGAATGTTTTGCCACATTTGTCAGCTGTTGAATTCCACTCAGCTTGGGCTATGGG
C
ATGAGGGTCAATTTCCTTGCATCCAACATACATTACCCCTCAAAGAAAATGACAGGAAGTGGCATCTAT
GCA
CCCAATTCTTCAAGAGCATTTCATTATGATATGAAGACAGAAGAGGGAAAACTCCTCCTCTCGCAAC
TG
GATTCCCACCCATCCCATTCTGCAGTGGTGAACTGGACTTCCTATGCCAGCAGTATAGAAGCGCTCTC
A
TCAGGAAACAAGGAATTTAAAGGCACTGTCTTTTTCGATGAATTCACTTTTGTGAAGCTCACAGGAGTT
GCA
GGAAATTATACAGTTTGTCAGAAAGATCTCTGCTGTCATTTAAGCTACAAAATGTCTGAGAACATAC
CA
AATGAAGTGTACGCTCTAGGGGCATTTGACGGACTGCACACTGTGGAAGGGCGCTATTATCTACAGAT
T
TGTACCCTGTTGAAATGTAAAACGACTAATTTAAACACTTGCGGTGACTCAGCTGAAACAGCTTCTACC
AGG
TTTGAAATGTTCTCCCTCAGTGGCACTTTCGGAACCCAGTATGTCTTTCCTGAGGTGTTGCTGAGTG
AA
AATCAGCTTGCACCTGGAGAATTTCAGGTGTCAACTGACGGACGCTTGTTTAGTCTGAAGCCAACATC
C
GGACCTGTCTTAACAGTAACTCTGTTTGGGAGGTTGTATGAGAAGGACTGGGCATCAAATGCTTCATCA
GGC
CTCACAGCACAAGCAAGAATAATAATGCTAATAGTTATAGCACCTATTGTATGCTCATTAAGTTGGT
AG


Translation (513 aa):
MTTQLPAYVAILLFYVSRASCQDTFTAAVYEHAAILPNATLTPVSREEALALMNRNLDILEGAITSAADQ
G
AHIIVTPEDAIYGWNFNRDSLYPYLEDIPDPEVNWIPCNNRN
RFGQTPVQERLSCLAKNNSIYVVANIG
D
KKPCDTSDPQCPPDGRYQYNTDVVFDSQGKLVARYHK
QNLFMGENQFNVPKEPEIVTFNTTFGSFGIFT
C
FDILFHDPAVTLVKDFHVDTIVFPTAWMNVLPHLSAVEFHSAWAMGMRVNFLASNIHYPSKKMT
GSGIY
A
PNSSRAFHYDMKTEEGKLLLSQLDSHPSHSAVVNWTSYASSIEALSSGNKEFKGTVFFDEFTFVKLTGV
A
GNYTVCQKDLCCHLSYKMSENIPNEVYALGAFDGLHTVEGRYYLQ
ICTLLKCKTTNLNTCGDSAETAST
R
FEMFSLSGTFGTQYVFPEVLLSENQLAPGEFQ
VSTDGRLFSLKPTSGPVLTVTLFGRLYEKDWASNASS
G
LTAQARIIMLIVIAPIVCSLSW




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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