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Report for CCDS51525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51525.1 Public Mus musculus 5 Kit 23 108 98 CCDS HistoryNCBI Gene:16590Re-query CCDS DB by CCDS ID:51525.1Re-query CCDS DB by GeneID:16590See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005815.6 ENSMUSP00000005815.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005815.6Link to Ensembl Protein Viewer:ENSMUSP00000005815.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005815Re-query CCDS DB by Protein ID:ENSMUSP00000005815
Original member Current member NCBI NM_001122733.1 NP_001116205.1 Accepted alive Link to Nucleotide Sequence:NM_001122733.1Link to Protein Sequence:NP_001116205.1Re-query CCDS DB by Nucleotide ID:NM_001122733Re-query CCDS DB by Protein ID:NP_001116205Link to BLAST:NP_001116205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116205.1 979 P05532-1 979 100% 0 0

Chromosomal Locations for CCDS 51525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 75575052 75575118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75607026 75607298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75609270 75609551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75610807 75610943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75615319 75615493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75620847 75621036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75622989 75623104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75637294 75637408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75638965 75639158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75640493 75640599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75640699 75640825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75641110 75641214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75641327 75641437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75645836 75645986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75647748 75647836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75648387 75648514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75649547 75649669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75652550 75652661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75652757 75652856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75653220 75653325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75654414 75654545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2940 nt):
ATGAGAGGCGCTCGCGGCGCCTGGGATCTGCTCTGCGTCCTGTTGGTCCTGCTCCGTGGCCAGACAGCCA
CGTCTCAGCCATCTGCAAGTCCAGGGGAGCCGTCTCCGCCATCCATCCATCCAGCACAATCAGAGTTAAT
AGTTGAAGCTGGCGACACCCTCAGCCTGACGTGCATTGATCCCGACTTTGTCAGATGGACTTTCAAGACC
TATTTCAATGAAATGGTTGAGAATAAAAAAAATGAATGGATCCAGGAAAAAGCCGAGGCCACTCGCACGG
GCACATACACGTGCAGCAACAGCAATGGCCTCACGAGTTCTATTTACGTGTTTGTTAGAGATCCTGCCAA
ACTTTTCCTGGTTGGCCTTCCCTTGTTTGGCAAAGAAGACAGCGACGCGCTGGTCCGCTGCCCTCTGACA
GACCCACAGGTGTCCAATTATTCCCTCATCGAGTGTGATGGGAAATCTCTCCCCACGGACCTGACGTTTG
TCCCAAACCCCAAGGCTGGCATCACCATCAAAAACGTGAAGCGCGCCTACCACCGGCTCTGTGTCCGCTG
TGCTGCTCAGCGTGACGGTACATGGCTGCATTCTGACAAATTCACCCTCAAAGTGCGGGCAGCCATCAAG
GCTATCCCTGTTGTGTCTGTGCCTGAAACAAGTCACCTCCTTAAGAAAGGGGACACATTTACGGTGGTGT
GCACCATAAAAGATGTGTCTACATCCGTGAACTCCATGTGGCTAAAGATGAACCCTCAGCCTCAGCACAT
AGCCCAGGTAAAGCACAATAGCTGGCACCGGGGTGACTTCAATTATGAACGCCAGGAGACGCTGACTATC
AGCTCGGCAAGAGTTGACGATTCTGGAGTGTTCATGTGTTATGCCAATAATACTTTTGGATCAGCAAATG
TCACAACAACCTTGAAAGTAGTAGAAAAAGGATTCATCAACATCTCCCCTGTGAAGAACACTACAGTATT
TGTAACCGATGGAGAAAACGTAGATTTGGTTGTTGAATACGAGGCCTACCCCAAACCCGAGCACCAGCAG
TGGATATATATGAACAGGACCTCGGCTAACAAAGGGAAGGATTATGTCAAATCTGATAACAAAAGCAACA
TCAGATATGTGAACCAACTTCGCCTGACCAGATTAAAAGGCACAGAAGGAGGCACTTATACCTTTCTGGT
GTCCAACTCTGATGCCAGTGCTTCCGTGACATTCAACGTTTACGTGAACACAAAACCAGAAATCCTGACG
TACGACAGGCTCATAAATGGCATGCTCCAGTGTGTGGCAGAGGGATTCCCGGAGCCCACAATAGATTGGT
ATTTTTGTACAGGAGCAGAGCAAAGGTGTACCACTCCTGTCTCACCAGTGGACGTACAGGTCCAGAATGT
ATCTGTGTCACCATTTGGAAAACTGGTGGTTCAGAGTTCCATAGACTCCAGCGTCTTCCGGCACAACGGC
ACGGTGGAGTGTAAGGCCTCCAACGATGTGGGCAAGAGTTCCGCCTTCTTTAACTTTGCATTTAAAGGTA
ACAACAAAGAGCAAATCCAGGCCCACACTCTGTTCACGCCGCTGCTCATTGGCTTTGTGGTTGCAGCTGG
CGCGATGGGGATCATTGTGATGGTGCTCACCTACAAATATTTGCAGAAACCCATGTATGAAGTACAATGG
AAGGTTGTCGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCGACGCAACTTCCTTATGATCACA
AATGGGAGTTTCCCAGAAACAGGCTGAGTTTTGGAAAGACATTGGGAGCTGGTGCCTTCGGGAAGGTCGT
TGAGGCCACTGCATATGGCTTGATTAAGTCGGATGCTGCCATGACAGTTGCCGTGAAGATGCTCAAACCA
AGTGCCCATTTAACAGAAAGAGAGGCCCTAATGTCGGAACTGAAGGTCCTGAGCTACCTGGGCAATCACA
TGAATATTGTGAACCTGCTTGGCGCATGCACGGTGGGAGGGCCCACCCTGGTCATTACAGAATATTGTTG
CTATGGTGATCTTTTGAATTTTTTGAGAAGGAAGCGTGACTCGTTTATTTTCTCAAAGCAAGAAGAGCAG
GCAGAAGCGGCACTTTATAAGAACCTTCTGCACTCAACGGAGCCTTCCTGTGACAGTTCAAATGAATATA
TGGACATGAAGCCTGGCGTTTCCTACGTGGTGCCAACCAAGACAGACAAGAGGAGATCCGCAAGAATAGA
CTCGTACATAGAAAGAGACGTGACTCCTGCCATCATGGAAGATGACGAGCTGGCTCTGGACCTGGATGAT
TTGCTGAGCTTCTCCTACCAGGTGGCCAAGGGCATGGCGTTCCTCGCCTCCAAGAATTGTATTCACAGAG
ATTTGGCAGCCAGGAATATCCTCCTCACTCACGGGCGGATCACAAAGATTTGCGATTTCGGGCTAGCCAG
AGACATCAGGAATGATTCGAATTACGTGGTCAAAGGAAATGCACGACTGCCCGTGAAGTGGATGGCACCA
GAGAGCATTTTCAGCTGCGTGTACACATTTGAAAGTGATGTCTGGTCCTATGGGATTTTCCTCTGGGAGC
TCTTCTCCTTAGGAAGCAGCCCCTACCCAGGGATGCCGGTCGACTCCAAGTTCTACAAGATGATCAAGGA
AGGCTTCCGGATGGTCAGCCCGGAGCACGCGCCTGCCGAAATGTATGACGTCATGAAGACTTGCTGGGAC
GCTGACCCCTTGAAAAGGCCAACATTCAAGCAGGTTGTCCAACTTATTGAGAAGCAGATCTCGGACAGCA
CCAAGCACATTTACTCCAACTTGGCAAACTGCAACCCCAACCCAGAGAACCCCGTGGTGGTGGACCATTC
CGTGAGGGTCAACTCGGTGGGCAGCAGCGCCTCTTCTACGCAGCCCCTGCTCGTGCACGAAGATGCCTGA

Translation (979 aa):
MRGARGAWDLLCVLLVLLRGQTATSQPSASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDFVRWTFKT
YFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT
DPQVSNYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRAAIK
AIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTI
SSARVDDSGVFMCYANNTFGSANVTTTLKVVEKGFINISPVKNTTVFVTDGENVDLVVEYEAYPKPEHQQ
WIYMNRTSANKGKDYVKSDNKSNIRYVNQLRLTRLKGTEGGTYTFLVSNSDASASVTFNVYVNTKPEILT
YDRLINGMLQCVAEGFPEPTIDWYFCTGAEQRCTTPVSPVDVQVQNVSVSPFGKLVVQSSIDSSVFRHNG
TVECKASNDVGKSSAFFNFAFKGNNKEQIQAHTLFTPLLIGFVVAAGAMGIIVMVLTYKYLQKPMYEVQW
KVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKP
SAHLTEREALMSELKVLSYLGNHMNIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFIFSKQEEQ
AEAALYKNLLHSTEPSCDSSNEYMDMKPGVSYVVPTKTDKRRSARIDSYIERDVTPAIMEDDELALDLDD
LLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAP
ESIFSCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMVSPEHAPAEMYDVMKTCWD
ADPLKRPTFKQVVQLIEKQISDSTKHIYSNLANCNPNPENPVVVDHSVRVNSVGSSASSTQPLLVHEDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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