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Report for CCDS51121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51121.1 Public Mus musculus 4 Pdp1 23 108 98 CCDS HistoryNCBI Gene:381511Re-query CCDS DB by CCDS ID:51121.1Re-query CCDS DB by GeneID:381511See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095144.9 ENSMUSP00000092766.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095144.9Link to Ensembl Protein Viewer:ENSMUSP00000092766.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095144Re-query CCDS DB by Protein ID:ENSMUSP00000092766
Original member Current member EBI ENSMUST00000108299.1 ENSMUSP00000103934.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108299.1Link to Ensembl Protein Viewer:ENSMUSP00000103934.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108299Re-query CCDS DB by Protein ID:ENSMUSP00000103934
Original member NCBI NM_001098230.1 NP_001091700.1 Updated not alive Link to Nucleotide Sequence:NM_001098230.1Link to Protein Sequence:NP_001091700.1Re-query CCDS DB by Nucleotide ID:NM_001098230Re-query CCDS DB by Protein ID:NP_001091700
Current member NCBI NM_001098230.2 NP_001091700.1 Accepted alive Link to Nucleotide Sequence:NM_001098230.2Link to Protein Sequence:NP_001091700.1Re-query CCDS DB by Nucleotide ID:NM_001098230Re-query CCDS DB by Protein ID:NP_001091700Link to BLAST:NP_001091700.1
Original member NCBI NM_001290391.1 NP_001277320.1 Updated not alive Link to Nucleotide Sequence:NM_001290391.1Link to Protein Sequence:NP_001277320.1Re-query CCDS DB by Nucleotide ID:NM_001290391Re-query CCDS DB by Protein ID:NP_001277320
Current member NCBI NM_001290391.2 NP_001277320.1 Accepted alive Link to Nucleotide Sequence:NM_001290391.2Link to Protein Sequence:NP_001277320.1Re-query CCDS DB by Nucleotide ID:NM_001290391Re-query CCDS DB by Protein ID:NP_001277320Link to BLAST:NP_001277320.1

Chromosomal Locations for CCDS 51121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11960573 11962233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11965614 11965644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGTGTGTGTGTCCCGGGCCCAGACGAATTGGAATCCCAGTCAGAACGTCCAGTCTGCCACTGTTCTCTG
ATGCCATGCCAGCACCAACTCAACTGTTTTTTCCTCTCGTCCGTAACTGTGAACTGAGCAGAATCTATGG
CACTGCATGTTACTGCCACCACAAACATCTCTGCTGTTCACCACCATACATTCCTCAGAATCGTCTGAGG
TACACACCCCATCCTGCATATGCTACCTTTTGTAGGCCACGGGAGAACTGGTGGCAGTATACTCAAGGAA
GGAGATACGCTTCTACACCGCAGAAATTTTACCTCACACCTCCACAAGTCAACAGCATCCTTAAAGCTAA
TGAATACAGCTTCAAAGTACCAGAATTTGATGGCAAAAATGTCAGTTCCATTCTTGGATTTGACAGCAAT
CAGCTGCCTGCAAATGCACCCATAGAGGACCGGAGAAGTGCAGCAACCTGCTTGCAGACCAGAGGGATGC
TCTTGGGGGTTTTTGATGGTCATGCAGGCTGTGCTTGTTCCCAGGCAGTCAGTGAAAGACTCTTCTATTA
TATTGCTGTTTCCTTGTTGCCCCATGAGACTTTGCTAGAGATTGAAAATGCAGTGGAGAGTGGTCGGGCA
CTGCTACCTATCCTTCAGTGGCACAAGCACCCCAATGATTACTTCAGTAAGGAGGCGTCCAAATTGTATT
TCAACAGCTTGAGGACTTACTGGCAAGAACTCATAGACCTCAATACTGGAGAATCAGCTGATATTGATGT
TAAGGAGGCTTTAATTAATGCTTTCAAGAGACTCGATAATGACATTTCATTGGAGGCTCAAGTTGGTGAT
CCTAATTCTTTTCTAAATTACCTGGTGCTTCGGGTAGCATTTTCTGGGGCTACTGCTTGTGTGGCCCATG
TAGATGGTGTTGACCTCCATGTGGCTAACACTGGTGATAGTAGAGCCATGCTAGGTGTGCAAGAAGAAGA
TGGCTCTTGGTCAGCAGTCACACTCTCTAATGACCACAATGCTCAGAATGAAAGAGAACTAGAGCGTCTG
AAACTGGAACACCCAAAAAATGAGGCCAAGAGCGTGGTAAAGCAGGACCGGCTGCTTGGCTTGCTGATGC
CCTTTAGGGCTTTTGGAGATGTAAAGTTCAAATGGAGCATTGACCTTCAAAAGAGAGTGATAGAGTCTGG
CCCAGACCAGTTGAATGACAATGAATACACCAAGTTTATCCCTCCTAACTATCATACACCTCCTTATCTT
ACTGCTGAGCCAGAGGTAACTTATCACAGATTAAGGCCACAGGATAAATTCCTAGTGTTAGCAACTGATG
GGTTGTGGGAGACTATGCATAGACAGGATGTGGTTAGGATTGTGGGTGAATACTTAACTGGTATGCATCA
CCAACAGCCAATAGCAGTTGGTGGGTACAAGGTGACTCTGGGACAGATGCATGGCCTTTTAACAGAAAGG
AGAGCAAAGATGTCATCAGTGTTTGAGGATCAGAATGCAGCAACCCATCTCATTCGCCATGCTGTAGGCA
ATAATGAATTTGGGGCTGTTGATCATGAACGACTCTCTAAAATGCTTAGTCTTCCTGAAGAGCTTGCTCG
GATGTATAGAGATGACATTACAATCATTGTAGTTCAGTTCAATTCTCATGTTGTAGGGGCATACCAAAAC
CAGGAACAGTAA

Translation (563 aa):
MCVCPGPRRIGIPVRTSSLPLFSDAMPAPTQLFFPLVRNCELSRIYGTACYCHHKHLCCSPPYIPQNRLR
YTPHPAYATFCRPRENWWQYTQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSN
QLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRA
LLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGD
PNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERL
KLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYL
TAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTER
RAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQN
QEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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