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Report for CCDS50966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50966.1 Public Mus musculus 3 Ubap2l 23 108 98 CCDS HistoryNCBI Gene:74383Re-query CCDS DB by CCDS ID:50966.1Re-query CCDS DB by GeneID:74383See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064639.14 ENSMUSP00000066138.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064639.14Link to Ensembl Protein Viewer:ENSMUSP00000066138.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000064639Re-query CCDS DB by Protein ID:ENSMUSP00000066138
Original member Current member NCBI NM_001165983.2 NP_001159455.1 Accepted alive Link to Nucleotide Sequence:NM_001165983.2Link to Protein Sequence:NP_001159455.1Re-query CCDS DB by Nucleotide ID:NM_001165983Re-query CCDS DB by Protein ID:NP_001159455Link to BLAST:NP_001159455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159455.1 1112 Q80X50-5 1112 100% 0 0

Chromosomal Locations for CCDS 50966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90000896 90000991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90002279 90002476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90003245 90003312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90008256 90008361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90009110 90009327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90010433 90010514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90012686 90012739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90015130 90015218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90015302 90015497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90016699 90016771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90017115 90017289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90018414 90018468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90019152 90019341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90020897 90021069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90021239 90021516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90023431 90023629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90025063 90025234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90026593 90026678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90028325 90028377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90031296 90031370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90034065 90034177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90034655 90034700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90038370 90038465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90038848 90039016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90043700 90043810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90044854 90044931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90047770 90047859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3339 nt):
ATGATGACGTCGGTGGGCACTAACCGAGCCCGGGGAAACTGGGAACAACCTCAAAACCAAAACCAGACAC
AGCACAAGCAGCGGCCACAGGCCACTGCAGAGCAAATTCGACTTGCACAGATGATTTCGGACCATAATGA
TGCTGACTTTGAGGAGAAGGTGAAACAATTGATTGATATCACAGGCAAAAACCAGGATGAATGTGTGATT
GCTTTGCATGACTGCAATGGAGATGTCAACAGAGCCATCAATGTTCTCCTGGAAGGAAATCCAGACACGC
ATTCCTGGGAGATGGTTGGGAAGAAGAAAGGAGTCTCAGGACAAAAGGATGGTGGACAAACTGAATCTAA
TGAAGAAGGAAAAGAAAATCGAGACCGGGACAGAGACTATAGTCGGCGACGTGGTGGGCCACCAAGACGG
GGGAGAGGTGCCAGCCGTGGACGAGAGTTTCGGGGCCAGGAAAATGGATTGGATGGCACCAAGAGTGGAG
GGCCTTCTGGAAGAGGCACAGACAGAGGCAGAAGAGGCCGTGGCCGTGGCAGAGGTAGTTCTGGTAGGCG
AGGAGGAAGGTTTTCTGCTCAAGGAATGGGAACCTTTAACCCAGCTGATTATGCAGAGCCAGCCAACACT
GATGATAACTATGGCAATAGCAGTGGCAATACATGGAACAACACTGGCCACTTTGAACCAGATGATGGAA
CAAGACTTGATTTCATTGGGGTTGAGGGGTCAAATTATCCCCGAAAATTTGAGACTGCTCCTGGTATGAT
ACATCCAGGTGCATGGAGGACTGCAACAGAAGAGTGGGGAACTGAAGACTGGAATGAAGATCTTTCTGAG
ACCAAGATCTTTACCGCCTCTAATGTGTCTTCAGTGCCTCTGCCTGCGGAGAATGTGACAATCACTGCTG
GTCAGAGAATTGACCTTGCTGTTCTGTTGGGGAAGACACCATCTTCAATGGAGAATGATTCATCTAATCT
GGATCCATCTCAGGCTCCTTCCCTGGCTCAGCCTCTGGTGTTTAGTAATTCGAAGCAGAATGCCATATCA
CAGCCTGCTTCAGGGAGTACATTTTCTCACCATAGCATGGTGAGCATGTTGGGGAAAGGATTTGGTGATG
TTGGGGAAGCTAAAGGTGGCAGTACAACAGGCTCCCAGTTCTTGGAGCAATTCAAGACTGCGCAGGCCCT
TGCTCAACTGGCAGCTCAACATTCTCAATCTGGAAGCACTACCACCTCCTCTTGGGATATGGGCTCAACA
ACACAATCACCATCACTGGTGCAGTATGATCTGAAGAGTGCAAATGATTCAACAGTGCACAGTCCTTTTA
CAAAGCGCCAGGCATTCACCCCATCTTCAACCATGATGGAGGTATTCCTTCAGGAGAAGCCACCTGCAGT
GGCTACCTCGACAGCTGCACCACCTCCCCCGTCTTCTCCTCTGCCAAGCAAATCCACCTCGGCTCCACAG
ATGTCTCCGGGGTCTTCAGACAACCAGTCCTCCAGCCCTCAGCCGGCTCAGCAGAAACTGAAACAGCAAA
AGAAGAAAACCTCCTTGACGTCTAAGATTCCTGCTCTGGCTGTGGAGATGCCTGGCTCAGCAGATATCTC
AGGGCTAAATCTACAGTTTGGGGCATTGCAGTTTGGGTCAGAGCCTGTCCTTTCTGATTATGAGTCCACC
CCCACCACGAGCGCCTCCTCAAGCCAGGCTCCTAGTAGCCTGTATACCAGCACGGCCAGTGAGTCTTCAT
CTACAGTTTCATCTAATCAGAGTCAGGAGTCTGGTTATCAGAGTGGCCCGATTCAGTCGACAACTTATAC
CTCCCAAAATAATGCTCAGGGCCCTCTATATGAACAGAGATCCACACAGACGCGGCGGTATCCCAGCTCC
ATCTCTTCATCACCCCAAAAGGACCTGACTCAGGCTAAGAATGGTTTTAGCTCTGTGCAGGCCACGCAGT
TACAGACCACGCAATCTGTTGAAGGTGCTACAGGCTCTGCAGTGAAATCTGAATCACCTTCCACTTCTAG
TATACCCTCTCTCAATGAAACAGTACCTGCAGCTTCCTTACTGACGACAGCCAATCAGCATTCATCCTCC
TTAAGTGGCTTGAGCCATACGGAGGAGATTCCAAATACCACCACCACACAACATAGCAGTGCATTATCTA
CACAGCAGAATACCCTTTCTTCATCAACATCTTCTGGGCGTACTTCAACATCCACTCTTTTGCATACAAG
TGTGGAGAGTGAGGCAAATCTACATTCTTCCTCCAGCACCTTCTCTACCACATCCAGCACTGTCTCTGCA
CCTCCCCCAGTGGTCAGTGTCTCCTCCAGTCTGAATAGTGGCAGTAGTCTGGGCCTTAGCCTGGGCAGCA
ACTCTACTGTCACAGCCTCAACTCGAAGCTCAGTTGCTACAACTTCAGGAAAAGCTCCTCCCAACCTTCC
TCCTGGAGTCCCGCCATTGTTGCCTAATCCATATATTATGGCTCCGGGGCTGTTACATGCCTATCCGCCA
CAAGTATATGGTTATGATGATTTACAGATGCTCCAGACAAGATTTCCATTGGATTACTACAGTATCCCGT
TTCCCACACCCACCACTCCACTTACTGGGAGGGATGGTAGCCTGGCCAGCAACCCTTACTCTGGCGACCT
CACCAAATTCGGCCGCGGGGATGCCTCCTCCCCAGCCCCAGCCACAACCTTGGCCCAACCCCAACAGAAC
CAGACGCAGACTCACCACACCACGCAGCAGACATTCCTGAACCCGGCGCTGCCTCCTGGCTATAGTTACA
CCAGCCTGCCATACTACACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTATGGGCCTGCTGTGTTCCC
TGTGGCTCCTACCTCTTCCAAGCAGCATGGTGTGAATGTCAGTGTGAATGCCTCGGCTACCCCTTTCCAA
CAGCCAAGTGGATATGGGTCTCATGGATACAACACTGGTGTGTCAGTCACCTCCAGTAACACGGGCGTGC
CAGATATATCCGGTTCTGTGTACTCCAAAACCCAGCAGTCCTTTGAGAAACAAGGGTTTCATTCCGGTAC
TCCTGCTGCCTCCTTCAACTTGCCTTCAGCCCTAGGAAGTGGAGGGCCCATCAATCCAGCCACAGCTGCT
GCCTACCCACCTGCCCCCTTTATGCATATTCTGACCCCACATCAGCAGCCACACTCTCAGATCCTTCACC
ATCACCTGCAGCAGGATGGCCAGACGGGCAGCGGGCAACGTAGCCAGACCAGCTCCATCCCGCAGAAGCC
CCAGACCAACAAGTCTGCCTACAACAGCTACAGCTGGGGGGCCAACTGA

Translation (1112 aa):
MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVI
ALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRR
GRGASRGREFRGQENGLDGTKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANT
DDNYGNSSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGMIHPGAWRTATEEWGTEDWNEDLSE
TKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAIS
QPASGSTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGST
TQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQ
MSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYEST
PTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSS
ISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTANQHSSS
LSGLSHTEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTSSTVSA
PPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPP
QVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQN
QTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQ
QPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAA
AYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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