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Report for CCDS50938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50938.1 Public Mus musculus 3 Rbm46 23 108 98 CCDS HistoryNCBI Gene:633285Re-query CCDS DB by CCDS ID:50938.1Re-query CCDS DB by GeneID:633285See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 50938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048647.13 ENSMUSP00000045511.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048647.13Link to Ensembl Protein Viewer:ENSMUSP00000045511.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048647Re-query CCDS DB by Protein ID:ENSMUSP00000045511
Original member NCBI NM_001146328.2 NP_001139800.1 Updated not alive Link to Nucleotide Sequence:NM_001146328.2Link to Protein Sequence:NP_001139800.1Re-query CCDS DB by Nucleotide ID:NM_001146328Re-query CCDS DB by Protein ID:NP_001139800
Current member NCBI NM_001146328.3 NP_001139800.1 Accepted alive Link to Nucleotide Sequence:NM_001146328.3Link to Protein Sequence:NP_001139800.1Re-query CCDS DB by Nucleotide ID:NM_001146328Re-query CCDS DB by Protein ID:NP_001139800Link to BLAST:NP_001139800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139800.1 533 P86049 533 100% 0 0

Chromosomal Locations for CCDS 50938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 82837233 82837432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82863905 82864687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82865205 82865672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82866486 82866636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGAATGAAGAAAACACTGATGGTACAAATGGATGCAGTAAAGTGCGCACTGGCACTCAGAATGAAGCCG
CATTGCTGGCTCTCATGGAAAAGACTGGCTACAACATGGTCCAAGAAAATGGGCAAAGGAAATTTGGTGG
TCCTCCTCCAGGTTGGGAAGGTCCACCTCCCCCTAGAGGTTGTGAAGTTTTTGTTGGAAAAATACCTCGT
GATATGTATGAAGATGAACTGGTTCCTGTATTTGAAAGAGCTGGGAAGATATATGAATTTAGACTGATGA
TGGAATTTAGTGGTGAAAATAGAGGTTATGCTTTTGTGATGTATACTACTAAAGAAGAAGCCCAATTAGC
CATCCGGATTCTTAACAATTATGAAATTCGACCAGGGAAGTTTATTGGTGTGTGTGTAAGCTTGGATAAT
TGCAGATTATTTATTGGAGCAATTCCCAAAGAAAAGAAAAAGGAAGAAATTTTGGATGAAATGAAGAAAG
TTACCGAAGGTGTTGTGGATGTGATTGTTTATCCAAGTGCAACTGACAAAACCAAGAACCGTGGGTTTGC
CTTTGTTGAGTATGAGTCCCACAGAGCTGCTGCTATGGCCAGGAGAAAGCTGATTCCAGGAACATTTCAA
CTCTGGGGCCACACCATTCAGGTAGATTGGGCTGATCCAGAGAAAGAAGTTGATGAGGAAACCATGCAAA
GAGTTAAAGTTCTGTATGTAAGAAATCTAATGATCTCAACTACAGAGGAGACAATTAAAGCAGAGTTCAG
TAAATTCAAGCCTGGCGCAGTGGAGCGAGTGAAGAAACTGAGAGATTATGCCTTTGTTCACTTTTTCCAC
CGAGAAGATGCAGTGGCTGCCATGTCTGTGATGAATGGAAAGTGCATTGATGGAGCCAGTATTGAGGTAA
CCCTGGCAAAGCCAGTAAATAAGGAAAATACTTGGCGACAGCATCTTAATGGCCAGATCAGCCCCAATTC
TGAAAACCTACTTGTATATGCTAACAAGGAAGAGAGTCACTCCAAAAGTCTAGGCAAGCCACCAACTCTC
CCCACTCGTCTCAATGGTCAGCATAGTCCAAGCCCCCCTGAGATTGAAAGATGTACTTACCCTTTTTTTC
CTGGAACAAAGCTGACCCCAATTAGTATGTATTCTTTAAAATCCAATCATTTTAATTCTGCAGTGATGCA
TTTGGATTATTACTGCAACAAAAATAATTGGGCACCACCAGAATATTATTTATATTCAACAACCAGTCAG
GATGGGAAAGTACTCTTGGTGTACAAGATAGTTATCCCTGCAATCGCAAATGGATCTCAGAGTTACTTCA
TGCCAGATAAACTCTGCACAACGCTGGAGGATGCAAAGGAGCTGGCAGCTCAGTTTACACTGCTTCATTT
GGACTTCAATTTCCGTCGCAGCTCAATAAATAGTCTTTCCCCTGTTAGCACTACCCTCTCTTCTGGGACT
CCCAGCATGCTTCCTTACACATCAAGGCCTTCTTCTTATCCAAGCTATCCCTTGTCACCAACAATATCAC
TTGCTAATGGCAGCCATGTTGGACAACGACTGTATATCTCCAATCAGGCCTCATTCTTCTGA

Translation (533 aa):
MNEENTDGTNGCSKVRTGTQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPR
DMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDN
CRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQ
LWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRDYAFVHFFH
REDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLLVYANKEESHSKSLGKPPTL
PTRLNGQHSPSPPEIERCTYPFFPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQ
DGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDFNFRRSSINSLSPVSTTLSSGT
PSMLPYTSRPSSYPSYPLSPTISLANGSHVGQRLYISNQASFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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