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Report for CCDS50927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50927.1 Public Mus musculus 3 Schip1 23 108 98 CCDS HistoryNCBI Gene:30953Re-query CCDS DB by CCDS ID:50927.1Re-query CCDS DB by GeneID:30953See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50927.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169909.9 ENSMUSP00000129152.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169909.9Link to Ensembl Protein Viewer:ENSMUSP00000129152.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169909Re-query CCDS DB by Protein ID:ENSMUSP00000129152
Original member Current member NCBI NM_001113420.1 NP_001106891.1 Accepted alive Link to Nucleotide Sequence:NM_001113420.1Link to Protein Sequence:NP_001106891.1Re-query CCDS DB by Nucleotide ID:NM_001113420Re-query CCDS DB by Protein ID:NP_001106891Link to BLAST:NP_001106891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106891.1 256 P0DPB4-4 256 100% 0 0

Chromosomal Locations for CCDS 50927.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 68064942 68065007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68596150 68596268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68616440 68616557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68617611 68617808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68618596 68618719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68620973 68621066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68625807 68625858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGAGAGGTCTGAGCAGCGCGTAAGGGCCGCGTGGGACTGCGACCCAGGCAAGCAAGCTGACAGAGCAC
AGAAGAATGAGAGAGAGTCTATCAGACAGAAGTTGGCACTCGGAAGCTTCTTTGACGATGGCCCAGGAAT
CTATACCAGCTGCAGCAAAAGTGGGAAGCCAAGCCTTTCTGCAAGACTACAGAGCGGGATGAACCTCCAG
ATATGCTTTGTCAATGACAGCGGCAGTGACAAGGACAGCGATGCAGATGACAGTAAGACGGAAACCAGCT
TGGACACGCCCTTGTCCCCCATGAGCAAGCAGAGTTCTTCCTATTCGGATAGAGACACAACTGAGGAGGA
GTCTGAATCCCTGGATGACATGGACTTCCTCACAAGGCAAAAGAAGCTACAAGCTGAAGCCAAAATGGCT
CTGGCCATGGCCAAACCAATGGCCAAAATGCAAGTAGAAGTGGAAAAACAGAACAGGAAAAAGTCTCCCG
TCGCTGATCTTCTCCCACACATGCCTCACATAAGCGAATGTTTGATGAAAAGAAGCTTAAAGCCCACCGA
CCTGAGAGACATGACTATCGGGCAGCTACAAGTGATCGTCAATGACCTCCACTCCCAGATTGAAAGTTTG
AATGAAGAGTTGGTCCAGCTGCTCCTTATTCGAGATGAGCTGCACACAGAACAAGATGCCATGCTGGTGG
ACATTGAAGACTTGACTAGACACGCTGAGAGTCAGCAGAAGCACATGGCTGAGAAAATGCCCGCGAAGTG
A

Translation (256 aa):
MERSEQRVRAAWDCDPGKQADRAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSARLQSGMNLQ
ICFVNDSGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMA
LAMAKPMAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIESL
NEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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