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Report for CCDS50811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50811.1 Public Mus musculus 2 Spo11 23 108 98 CCDS HistoryNCBI Gene:26972Re-query CCDS DB by CCDS ID:50811.1Re-query CCDS DB by GeneID:26972See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109126.4 ENSMUSP00000104754.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109126.4Link to Ensembl Protein Viewer:ENSMUSP00000104754.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109126Re-query CCDS DB by Protein ID:ENSMUSP00000104754
Original member NCBI NM_001083959.1 NP_001077428.1 Updated not alive Link to Nucleotide Sequence:NM_001083959.1Link to Protein Sequence:NP_001077428.1Re-query CCDS DB by Nucleotide ID:NM_001083959Re-query CCDS DB by Protein ID:NP_001077428
Current member NCBI NM_001083959.2 NP_001077428.1 Accepted alive Link to Nucleotide Sequence:NM_001083959.2Link to Protein Sequence:NP_001077428.1Re-query CCDS DB by Nucleotide ID:NM_001083959Re-query CCDS DB by Protein ID:NP_001077428Link to BLAST:NP_001077428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077428.1 371 Q9WTK8-3 371 100% 0 0

Chromosomal Locations for CCDS 50811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172979894 172980024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172984016 172984104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172984872 172984938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172985358 172985505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172985904 172985990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172986792 172986828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172987128 172987237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172988931 172989030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172989368 172989405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172989924 172990000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172992046 172992157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172992984 172993103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGCGTTCGCGCCTATGGGGCCCGAGGCCTCGTTCTTCGACGCCCTGGATCGGCACAGGGCTTCCCTGT
TGGCCATGGTGAAGAGAGGCGCAGGGGAGACCCCTGCCGGGGCCACCCGCGTGGCCTCTAGGTTTGATGA
TTCTGTCGGCCTTCGGATGATACCTCAGTGTACCACAAGAAAAATCAGAAGCGATTCACCAAAATCAGTT
AAGAAATTCGCTCTGATTCTGAAAGTATTGTCCATGATTTATAAATTAATACAGAGCGACACTTATGCAA
CCAAGAGGAGCAATGCTCATTCTGTGTTGACCTTGCATCTGCATAGAGACATATACTACACTGACAGCCA
GCTCTTTGGGAACCAGGCTGCGGTGGACAGCGCCATCGATGACATTTCCTGTATGCTGAAAGTGCCCAGG
AGGAGTCTGCACGTGCTATCTACTTCCAAGGGATTGATTGCTGGCAACTTGAGATACATGGAGGAAGATG
GTACCAGAGTCCAGTGTACCTGTAGTGCCACGGCTACTGCTGTGCCGACTAACATTCAAGGAATGCAGCA
TCTGATCACAGATGCGAAGTTTCTGTTAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCCTGGACGAC
AACTTCTGCAGCAGGATGTCCCCGTGCATCATGGTTACGGGAAAGGGCGTTCCAGATCTGAACACGAGGC
TCTTGGTAAAGAAGCTGTGGGACACCTTTCATATTCCTGTTTTCACACTGGTCGATGCAGATCCCTACGG
CATCGAGATAATGTGCATCTATAAGTACGGATCCATGTCCATGTCTTTTGAAGCTCACAATCTCACTATC
CCAACAATCAGATGGCTTGGTCTCCTCCCTTCTGATATCCAGAGGTTAAATATACCTAAGGATAGTTTGA
TCCCACTGACAAAGCATGACCAGATGAAGCTGGACAGCATCCTGAAGAGGCCTTACATTACCTACCAGCC
CCTCTGGAAAAAAGAGCTGGAGATGATGGCAGACTCTAAGATGAAGGCAGAGATCCAAGCCTTGACCTTG
CTGTCGTCAGACTACCTGTCCAGAGTGTACTTACCCAACAAGCTGAGGTTTGGAGGATGGATCTAA

Translation (371 aa):
MAFAPMGPEASFFDALDRHRASLLAMVKRGAGETPAGATRVASRFDDSVGLRMIPQCTTRKIRSDSPKSV
KKFALILKVLSMIYKLIQSDTYATKRSNAHSVLTLHLHRDIYYTDSQLFGNQAAVDSAIDDISCMLKVPR
RSLHVLSTSKGLIAGNLRYMEEDGTRVQCTCSATATAVPTNIQGMQHLITDAKFLLIVEKDATFQRLLDD
NFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVFTLVDADPYGIEIMCIYKYGSMSMSFEAHNLTI
PTIRWLGLLPSDIQRLNIPKDSLIPLTKHDQMKLDSILKRPYITYQPLWKKELEMMADSKMKAEIQALTL
LSSDYLSRVYLPNKLRFGGWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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