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Report for CCDS50775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50775.1 Public Mus musculus 2 6430550D23Rik 23 108 98 CCDS HistoryNCBI Gene:320095Re-query CCDS DB by CCDS ID:50775.1Re-query CCDS DB by GeneID:320095See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109617.8 ENSMUSP00000105246.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109617.8Link to Ensembl Protein Viewer:ENSMUSP00000105246.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109617Re-query CCDS DB by Protein ID:ENSMUSP00000105246
Original member Current member NCBI NM_001145351.1 NP_001138823.1 Accepted alive Link to Nucleotide Sequence:NM_001145351.1Link to Protein Sequence:NP_001138823.1Re-query CCDS DB by Nucleotide ID:NM_001145351Re-query CCDS DB by Protein ID:NP_001138823Link to BLAST:NP_001138823.1

Chromosomal Locations for CCDS 50775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156002468 156002486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156003101 156003250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156003325 156003485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156003681 156003935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGAGCACTGCTGGGTCTTCTGGGGGCTTGTCTTGTGGATGATTGCTCCCTGCCTGTACCTGACACATG
AATTGGCACCCCAGCAGGGATGGACATACATGGTACCACAGCAATGTAACTGGTTCTGCTTCAAATTTGG
AAAGCGTGGCTGCCCTTCAAAAAGCCCCAACTGTTCCACCTGCCACCACACAGCTGGGGAAGCATGTTAT
GAGAAGTTCATGGGATACTGGAGGACAAAAGCTCTCTGGTGGCTGGGCATGAACTCAGTGAGCGAGCATG
GGACAGTGTGGAAGAAGCCATCTGGAGTGACTCCCAATTCCCTCCTGCACCATTTTGATTTCCACTGTGT
GTCCTGTGCCATGCTGGGGAATTCTGGCTTCAGCAATATCAACCAATTATTCTACATGGCTTTCAGGACG
AATCAGGCCTCCAACCACAGCTCCGAGGCAGAGATGAGGAGCCAAACAGCAGGACCCTTCATCTGTCCCA
GGAATGCCAGTCACCAGGGTTTCTGGGGGCAGTACTGGTTATTGCAGCTTGCTGATCTGGTGCCCCAAGT
GACACGATTTTGGAAGATGGTCTGA

Translation (194 aa):
MEHCWVFWGLVLWMIAPCLYLTHELAPQQGWTYMVPQQCNWFCFKFGKRGCPSKSPNCSTCHHTAGEACY
EKFMGYWRTKALWWLGMNSVSEHGTVWKKPSGVTPNSLLHHFDFHCVSCAMLGNSGFSNINQLFYMAFRT
NQASNHSSEAEMRSQTAGPFICPRNASHQGFWGQYWLLQLADLVPQVTRFWKMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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