NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50728.1 Public Mus musculus 2 Trmt6 23 108 98 CCDS HistoryNCBI Gene:66926Re-query CCDS DB by CCDS ID:50728.1Re-query CCDS DB by GeneID:66926See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039554.6 ENSMUSP00000044687.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039554.6Link to Ensembl Protein Viewer:ENSMUSP00000044687.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039554Re-query CCDS DB by Protein ID:ENSMUSP00000044687
Original member Current member NCBI NM_175113.3 NP_780322.2 Accepted alive Link to Nucleotide Sequence:NM_175113.3Link to Protein Sequence:NP_780322.2Re-query CCDS DB by Nucleotide ID:NM_175113Re-query CCDS DB by Protein ID:NP_780322Link to BLAST:NP_780322.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780322.2 497 Q8CE96-1 497 100% 0 0

Chromosomal Locations for CCDS 50728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132805421 132805612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132806711 132806797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132806897 132806999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132808204 132808289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132808661 132809016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132809829 132809953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132810206 132810289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132810417 132810508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132810989 132811098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132812048 132812175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132815804 132815934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGAGGCATCAGCTGCGGAGCAGCCGAGCTCACCGCCCCCGCCTCTCGGGGACCACTGCATCCATGACG
GTGACTTCGTGGTGCTGAAGCGAGAAGATGTGTTCAAAGCAGTGCAAGTCCAGCGGAGAAAAAAAGTAAC
TTTTGAAAAGCAGTGGTTCTACCTGGATAACGCCATCGGCCATAGTTACGGCTCAGCGTTTGACGTGAGC
AGTGGAGGCAGCCTTCAGCTCAGGAAGAAGCTGGAGGAGCCCGCGTCAGAGACCAAAGAAGCAGGCACTG
ATAATCGAAATATAGTTGATGATGGAAAGTCCCAGAAACTTACTCAAGATGATATAAAAGCTCTGAAAGA
CAAGGGCATTAAAGGAGAGGAAATAGTTCAGCAGCTAATTGAAAATAGTACAACATTCCGTGACAAGACA
GAATTTGCCCAAGATAAATATATTAAAAAGAAGAAGAAAAAATATGAAGCCATCGTTACTATCTTGAAGC
CATCTACCCGTATTCTTTCAATTATGTATTATGCAAGAGAACCTGGAAAAATTAACCACATGAGATATGA
TACACTAGCCCAGATGTTGACGTTGGGAAATATCCGTGCCGGCAATAAAATGATTGTCATGGAAACGTGC
TCGGGCTTGGTGCTAGGTGCCATGATGGAACGAATGGGAGGCTTTGGCTCCATTATTCAGCTGTATCCTG
GAGATGGACCCGTTCGGGCGGCAACAGCATGTTTTGGATTTCCCAAATCTTTCCTCAGTGGTCTTTACGA
GTTCCCTCTCAACAAAGTAAACAGTCTCCTCAATGGGACATTTTCTGCTGAGATGCTGTCCTCAGAGCCT
AAAGACAGCACTCCAGTTGAAGAAAGTAACGGTGAGCTTGAGGAGAAAGAGATTGCTGAACAAGCGGATG
AAGACAACATTGTGGATGCCGCAGAAAACAACTCAGGAGAACAGAGACCAATGGAGATTGTTCCTGGGGA
CCCAGAGAATAAGGAGCCCAAAGAAAAAAGAAGCAAAAGAGATTATATTCAGGAAAAGCAAAGGAGACAA
GAAGAGCAGAGGAAAAGACATCTGGAGGCTGCTGCTCTGCTGGGAGAAAGAAATGCAGATGGTTTGATTG
TGGCCAGTCGTTTCCACCCCACGCCCCTGCTGCTGTCTTTGCTGGACTTTGTAGCCCCGTCAAGGCCGTT
TGTGGTCTACTGTCAGTATAAAGAGCCTTTGTTGGAATGCTACACAAAACTTCGGGAGAGGGGAGGAGTC
ATTAACCTGAGGTTGTCTGAAACCTGGCTCAGAAATTACCAGGTTCTGCCAGATCGGAGTCATCCCAAAT
TATTGATGAGTGGCGGTGGAGGGTACCTTCTGTCAGGGTTCACTGTTGTCTCAGACAGCCTTCGGGCAGA
CCCCAGCCTCAAGTCCTGCACAGGCGCTTTAGACCCACACAAGGCTGAGGAGCCAGCAGCTAAAAAACAG
AAATGCATGGAATCTGCCTCTTAA

Translation (497 aa):
MEASAAEQPSSPPPPLGDHCIHDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNAIGHSYGSAFDVS
SGGSLQLRKKLEEPASETKEAGTDNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKT
EFAQDKYIKKKKKKYEAIVTILKPSTRILSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETC
SGLVLGAMMERMGGFGSIIQLYPGDGPVRAATACFGFPKSFLSGLYEFPLNKVNSLLNGTFSAEMLSSEP
KDSTPVEESNGELEEKEIAEQADEDNIVDAAENNSGEQRPMEIVPGDPENKEPKEKRSKRDYIQEKQRRQ
EEQRKRHLEAAALLGERNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGV
INLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVVSDSLRADPSLKSCTGALDPHKAEEPAAKKQ
KCMESAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH