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Report for CCDS50620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50620.1 Public Mus musculus 2 Tfpi 23 108 98 CCDS HistoryNCBI Gene:21788Re-query CCDS DB by CCDS ID:50620.1Re-query CCDS DB by GeneID:21788See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090732.9 ENSMUSP00000088235.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090732.9Link to Ensembl Protein Viewer:ENSMUSP00000088235.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090732Re-query CCDS DB by Protein ID:ENSMUSP00000088235
Original member Current member EBI ENSMUST00000111714.7 ENSMUSP00000107343.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111714.7Link to Ensembl Protein Viewer:ENSMUSP00000107343.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111714Re-query CCDS DB by Protein ID:ENSMUSP00000107343
Original member Current member EBI ENSMUST00000111717.3 ENSMUSP00000107346.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111717.3Link to Ensembl Protein Viewer:ENSMUSP00000107346.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111717Re-query CCDS DB by Protein ID:ENSMUSP00000107346
Original member Current member NCBI NM_001177319.1 NP_001170790.1 Accepted alive Link to Nucleotide Sequence:NM_001177319.1Link to Protein Sequence:NP_001170790.1Re-query CCDS DB by Nucleotide ID:NM_001177319Re-query CCDS DB by Protein ID:NP_001170790Link to BLAST:NP_001170790.1
Original member Current member NCBI NM_001177320.1 NP_001170791.1 Accepted alive Link to Nucleotide Sequence:NM_001177320.1Link to Protein Sequence:NP_001170791.1Re-query CCDS DB by Nucleotide ID:NM_001177320Re-query CCDS DB by Protein ID:NP_001170791Link to BLAST:NP_001170791.1

Chromosomal Locations for CCDS 50620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84442870 84442925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84444010 84444138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84444740 84444916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84452557 84452595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84453800 84453997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84458023 84458131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGACTTACAAAATGAAGAAAGAATATGCCTTTTGGGCCACTGTGTGTCTGTTGCTTAGCCTTGTTCCCG
AGTTTCTTAATGCTCTGTCTGAGGAAGCTGATGACACAGATTCTGAGCTGGGGTCAATGAAACCGCTACA
TACATTTTGTGCAATGAAGGCAGATGATGGTCCATGCAAAGCAATGATAAGGAGTTATTTTTTCAATATG
TATACTCATCAATGTGAAGAATTTATATACGGGGGATGTGAAGGGAACGAGAACCGATTTGATACCCTGG
AAGAGTGTAAGAAAACATGCATACCAGGTTATGAGAAGACAGCTGTGAAGGCAGCATCTGGAGCAGAAAG
GCCAGATTTCTGCTTCTTGGAAGAGGACCCTGGACTCTGCCGAGGTTACATGAAGAGGTATCTTTATAAC
AACCAGACAAAGCAGTGTGAACGATTCGTGTACGGTGGCTGCCTGGGCAACCGCAACAACTTTGAAACTT
TGGATGAGTGCAAGAAGATCTGTGAGAATCCAGTCCACTCCCCTTCCCCAGTGAATGAGGTACAGATGAG
TGACTACGTAACTGATGGAAATACTGTAACTGATCGCAGTACTGTAAATAACATCGTGGTTCCCCAGTCT
CCCAAAGTGCCCAGGCGTCGGGCTGCCTTGGTACTGTATCACCTTTATGATATTTTGAAAAAACTCATCT
TTGGTTAG

Translation (235 aa):
MTYKMKKEYAFWATVCLLLSLVPEFLNALSEEADDTDSELGSMKPLHTFCAMKADDGPCKAMIRSYFFNM
YTHQCEEFIYGGCEGNENRFDTLEECKKTCIPGYEKTAVKAASGAERPDFCFLEEDPGLCRGYMKRYLYN
NQTKQCERFVYGGCLGNRNNFETLDECKKICENPVHSPSPVNEVQMSDYVTDGNTVTDRSTVNNIVVPQS
PKVPRRRAALVLYHLYDILKKLIFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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