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Report for CCDS50560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50560.1 Public Mus musculus 2 Fnbp1 23 108 98 CCDS HistoryNCBI Gene:14269Re-query CCDS DB by CCDS ID:50560.1Re-query CCDS DB by GeneID:14269See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113559.9 ENSMUSP00000109189.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113559.9Link to Ensembl Protein Viewer:ENSMUSP00000109189.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113559Re-query CCDS DB by Protein ID:ENSMUSP00000109189
Original member Current member NCBI NM_001177650.1 NP_001171121.1 Accepted alive Link to Nucleotide Sequence:NM_001177650.1Link to Protein Sequence:NP_001171121.1Re-query CCDS DB by Nucleotide ID:NM_001177650Re-query CCDS DB by Protein ID:NP_001171121Link to BLAST:NP_001171121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171121.1 522 Q80TY0-4 522 100% 0 0

Chromosomal Locations for CCDS 50560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 31028876 31028883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31033030 31033188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31036118 31036254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31036542 31036663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31037156 31037288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31040405 31040514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31052985 31053137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31054024 31054218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31055428 31055574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31058889 31059017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31082974 31083078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31084023 31084085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31096027 31096134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGAATGACTACGCCGGGCAGCACGAGGTCATCTCTGAGAACATGACGTCACAGATCACGGTGGACCTGA
TGCGCTACGTTCAGGAGCTGAAGCAGGAGAGGAAATCGAACTTCCATGATGGACGGAAGGCTCAGCAGCA
CATAGAAACGTGTTGGAAGCAACTGGAGTCAAGTAAGAGGAGGTTTGAGCGGGACTGTAAGGAAGCCGAC
CGGGCACAGCAGTACTTCGAGAAAATGGACGCTGACATCAACGTGACCAAGGCGGATGTGGAAAAGGCAC
GACAACAAGCTCAGATACGCCAGCAAATGGCAGAGGACAGCAAAGCAGATTACTCCTTAATCCTGCAGAG
ATTCAACCAGGAGCAATGGGAATACTACCATACCCACATCCCCAACATCTTCCAGAAAATACAAGAGATG
GAGGAGAGGCGGATTGTGCGTATTGGGGAGTCCATGAAGACGTACGCAGAGGTGGACCGGCAGGTGATAC
CCATCATCGGGAAGTGCCTGGACGGGATAGTGAAGGCGGCCGAGTCTATCGACCAGAAAAACGACTCCCA
GCTGGTCGTAGAAGCCTATAAGTCAGGATTCGAGCCTCCTGGAGACATTGAATTCGAAGATTACACACAG
CCAATGAAACGCACAGTGTCAGACAACAGCCTTTCCAGCTCCAAAGAAGGCAAGCCTGAGCTCAGATTTG
GCGGCAAGTCCAGAGGCAAGCTCTGGCCATTCATCAAGAAAAACAAGCCTCCCCCTCCGCCCCCTGCCTC
TGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCCAAAGGAACCCCTCTCCCACCGC
TTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGGGGTGTCACAC
CAGAAGACTTCAGCAACTTCCCACCTGAGCAGAGAAGGAAAAAACTACAACAGAAAGTTGACGATCTCAA
TAGAGAGATACAGAAGGAGACGGACCAGAGAGATGCCATCACCAAAATGAAAGATGTGTACCTAAAGAAC
CCTCAGATGGGAGACCCAGCCAGCCTGGACCAGAAGCTCACCGAAGTCACCCAGAACATAGAGAAACTGC
GGCTGGAGGCTCAGAAGTTTGAGGCCTGGCTGGCTGAGGTAGAAGGCAGACTCCCAGCTCGGAGTGAGCA
GGCACGCCGGCAGAGTGGACTGTATGATGGCCAGACACACCAGACGGTCACTAACTGTGCCCAGGACCGG
GAGAGCCCAGATGGTAGTTACACAGAGGAGCAAAGCCAGGAGAGCGAGCACAAGGTCCTGGCCCCGGATT
TCGACGATGAATTTGATGATGAGGAGCCGCTTCCAGCCATAGGGACCTGCAAGGCCCTCTACACATTTGA
AGGTCAGAACGAAGGCACCATTTCCGTAGTTGAAGGAGAGACGCTGAGCGTGATTGAAGAGGACAAAGGC
GATGGGTGGACTCGCATCCGCAGAAATGAAGACGAGGAGGGTTACGTCCCCACTTCCTACGTCGAAGTCT
ATTTAGACAAAAACGCCAAAGGTTCCTAA

Translation (522 aa):
MNDYAGQHEVISENMTSQITVDLMRYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEAD
RAQQYFEKMDADINVTKADVEKARQQAQIRQQMAEDSKADYSLILQRFNQEQWEYYHTHIPNIFQKIQEM
EERRIVRIGESMKTYAEVDRQVIPIIGKCLDGIVKAAESIDQKNDSQLVVEAYKSGFEPPGDIEFEDYTQ
PMKRTVSDNSLSSSKEGKPELRFGGKSRGKLWPFIKKNKPPPPPPASASPSAVPNGPQSPKQPKEPLSHR
FNEFMTSKPKIHCFRSLKRGGVTPEDFSNFPPEQRRKKLQQKVDDLNREIQKETDQRDAITKMKDVYLKN
PQMGDPASLDQKLTEVTQNIEKLRLEAQKFEAWLAEVEGRLPARSEQARRQSGLYDGQTHQTVTNCAQDR
ESPDGSYTEEQSQESEHKVLAPDFDDEFDDEEPLPAIGTCKALYTFEGQNEGTISVVEGETLSVIEEDKG
DGWTRIRRNEDEEGYVPTSYVEVYLDKNAKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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